STRINGSTRING
ldh ldh CPE0341 CPE0341 lysA lysA CPE1001 CPE1001 CPE1211 CPE1211 aspC-3 aspC-3 dapG dapG ansA ansA dapF dapF asd asd dapA dapA dapB dapB patA patA dapD dapD asnA asnA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ldhL-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (317 aa)
CPE0341Hypothetical protein; 528 aa, partially similar to pir:G75037 probable aromatic-amino-acid transaminase (EC 2.6.1.57) PAB1523 from Pyrococcus abyssi (strain Orsay) (390 aa); 33.1% identity in 172 aa overlap. (528 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (466 aa)
CPE1001540 aa, partially similar to pir:E71125 probable aromatic-amino-acid transaminase (EC 2.6.1.57) PH0771 from Pyrococcus horikoshii (391 aa); 25.8% identity in 233 aa overlap. (540 aa)
CPE1211465 aa, similar to pir:B69994 Xaa-His dipeptidase homolog ytjP from Bacillus subtilis (463 aa); 39% identity in 454 aa overlap. (465 aa)
aspC-3397 aa, similar to sp:AAT_BACSP ASPARTATE AMINOTRANSFERASE (EC 2.6.1.1) (TRANSAMINASE A) (ASPAT) from Bacillus sp. (strain YM-2 (392 aa); 50.4% identity in 389 aa overlap; CPE1670. (397 aa)
dapG398 aa, similar to gpu:AP001515_134 aspartokinase I (alpha and beta subunits) (EC 2.7.2.4) from Bacillus halodurans (411 aa); 46.5% identity in 396 aa overlap; CPE1678; Belongs to the aspartokinase family. (398 aa)
ansAL-asparaginase; 327 aa, similar to gpu:AP001512_211 L-asparaginase from Bacillus halodurans (322 aa); 48.2% identity in 141 aa overlap; CPE1752. (327 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (272 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (325 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (291 aa)
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. (254 aa)
patAProbable asparate aminotransferase; 380 aa, similar to prf:1603288B kinA assocd ORF Y from Bacillus subtilis (393 aa); 44.1% identity in 381 aa overlap.Also similar to many aminotransferases; CPE1907. (380 aa)
dapDProbable tetrahydrodipicolinate succinylase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. (236 aa)
asnAAspartate-ammonia ligase; 336 aa, similar to sp:ASNA_LACDE ASPARTATE-AMMONIA LIGASE (EC 6.3.1.1) (ASPARAGINE SYNTHETASE A) from Lactobacillus delbrueckii subsp. bulgaricus (336 aa); 56.3% identity in 336 aa overlap; CPE1978. (336 aa)
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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