STRINGSTRING
patA patA CPE0341 CPE0341 aspC aspC CPE1001 CPE1001 CPE1040 CPE1040 aspC-3 aspC-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
patAProbable asparate aminotransferase; 380 aa, similar to prf:1603288B kinA assocd ORF Y from Bacillus subtilis (393 aa); 44.1% identity in 381 aa overlap.Also similar to many aminotransferases; CPE1907. (380 aa)
CPE0341Hypothetical protein; 528 aa, partially similar to pir:G75037 probable aromatic-amino-acid transaminase (EC 2.6.1.57) PAB1523 from Pyrococcus abyssi (strain Orsay) (390 aa); 33.1% identity in 172 aa overlap. (528 aa)
aspC392 aa, similar to gpu:AP001518_181 aspartate aminotransferase from Bacillus halodurans (393 aa); 54.3% identity in 376 aa overlap; CPE0711. (392 aa)
CPE1001540 aa, partially similar to pir:E71125 probable aromatic-amino-acid transaminase (EC 2.6.1.57) PH0771 from Pyrococcus horikoshii (391 aa); 25.8% identity in 233 aa overlap. (540 aa)
CPE1040Probable Thr-phospho decarboxylase; 354 aa, similar to prf:2408370A Thr(phospho) decarboxylase from Salmonella typhimurium (364 aa); 37.6% identity in 258 aa overlap. (354 aa)
aspC-3397 aa, similar to sp:AAT_BACSP ASPARTATE AMINOTRANSFERASE (EC 2.6.1.1) (TRANSAMINASE A) (ASPAT) from Bacillus sp. (strain YM-2 (392 aa); 50.4% identity in 389 aa overlap; CPE1670. (397 aa)
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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