(5 nodes) Alpha-helical ferredoxin network (Clostridium perfringens 13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	asrA	338 aa, similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 45.3% identity in 333 aa overlap; CPE1440. (338 aa)
	CPE2461	413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT. (413 aa)
	CPE0580	376 aa, similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap. (376 aa)
	gltB	468 aa, similar to pir:H72230 glutamate synthase, beta subunit from Thermotoga maritima (strain MSB8) (468 aa); 52.2% identity in 460 aa overlap; CPE1254. (468 aa)
	asrA-2	343 aa, similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 39.5% identity in 342 aa overlap; CPE1538. (343 aa)

Your Current Organism:

Clostridium perfringens 13

NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPE0580	CPE2461	gene:10489837	gene:10491787	376 aa, similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap.	413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT.	0.625
CPE0580	gltB	gene:10489837	gene:10490517	376 aa, similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap.	468 aa, similar to pir:H72230 glutamate synthase, beta subunit from Thermotoga maritima (strain MSB8) (468 aa); 52.2% identity in 460 aa overlap; CPE1254.	0.752
CPE2461	CPE0580	gene:10491787	gene:10489837	413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT.	376 aa, similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap.	0.625
CPE2461	gltB	gene:10491787	gene:10490517	413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT.	468 aa, similar to pir:H72230 glutamate synthase, beta subunit from Thermotoga maritima (strain MSB8) (468 aa); 52.2% identity in 460 aa overlap; CPE1254.	0.910
asrA	asrA-2	gene:10490704	gene:10490802	338 aa, similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 45.3% identity in 333 aa overlap; CPE1440.	343 aa, similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 39.5% identity in 342 aa overlap; CPE1538.	0.904
asrA-2	asrA	gene:10490802	gene:10490704	343 aa, similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 39.5% identity in 342 aa overlap; CPE1538.	338 aa, similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 45.3% identity in 333 aa overlap; CPE1440.	0.904
gltB	CPE0580	gene:10490517	gene:10489837	468 aa, similar to pir:H72230 glutamate synthase, beta subunit from Thermotoga maritima (strain MSB8) (468 aa); 52.2% identity in 460 aa overlap; CPE1254.	376 aa, similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap.	0.752
gltB	CPE2461	gene:10490517	gene:10491787	468 aa, similar to pir:H72230 glutamate synthase, beta subunit from Thermotoga maritima (strain MSB8) (468 aa); 52.2% identity in 460 aa overlap; CPE1254.	413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT.	0.910