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| | dhaE | Glycerol dehydratase, small subunit; Identified by similarity to GB:AAC27924.1; match to protein family HMM PF02287. (141 aa) |
| | dhaG | Glycerol dehydratase reactivation factor, small subunit. (116 aa) |
| | CPF_1178 | Putative ATP:cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family. (170 aa) |
| | truA1 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (248 aa) |
| | CPF_1267 | Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004. (126 aa) |
| | CPF_1287 | Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. (432 aa) |
| | CPF_1322 | Identified by match to protein family HMM PF00383. (166 aa) |
| | fabF | 3-oxoacyl-(acyl-carrier-protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (413 aa) |
| | CPF_1335 | Identified by match to protein family HMM PF01261. (272 aa) |
| | CPF_1379 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (140 aa) |
| | CPF_1392 | UDP-N-acetylmuramyl tripeptide synthetase MurC homolog; Identified by match to protein family HMM PF08245; match to protein family HMM PF08353. (451 aa) |
| | CPF_1408 | Putative ATP-dependent helicase; Identified by similarity to SP:P26659; match to protein family HMM PF06733. (781 aa) |
| | CPF_1412 | ATPase, P-type (transporting), HAD superfamily, subfamily IC; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494. (868 aa) |
| | rpsU | 30S ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. (58 aa) |
| | ybeY | Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (168 aa) |
| | CPF_2274 | Identified by similarity to SP:P19638; match to protein family HMM PF01219; match to protein family HMM PF01569. (232 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (225 aa) |
| | CPF_2269 | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF08279. (210 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (595 aa) |
| | CPF_2238 | DNA topoisomerase; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751. (720 aa) |
| | CPF_2234 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515. (272 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa) |
| | CPF_2176 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (116 aa) |
| | CPF_2158 | Conserved hypothetical protein; Identified by similarity to GB:AAS43311.1; match to protein family HMM PF08241; match to protein family HMM PF08242. (245 aa) |
| | rpmI | 50S ribosomal protein L35; Identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | rplT | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa) |
| | CPF_2138 | Hypothetical protein; Identified by glimmer; putative. (451 aa) |
| | CPF_2132 | FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070; match to protein family HMM PF01791. (340 aa) |
| | CPF_2130 | Calx-beta domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF03160. (932 aa) |
| | rplY | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (202 aa) |
| | CPF_2126 | TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (365 aa) |
| | CPF_2123 | Methenyltetrahydrofolate cyclohydrolase; Identified by match to protein family HMM PF04961. (211 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (365 aa) |
| | CPF_2106 | S4 domain protein; Identified by match to protein family HMM PF01479. (253 aa) |
| | ispA | Geranyltranstransferase; Identified by similarity to SP:Q08291; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. (290 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (565 aa) |
| | iscS | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (398 aa) |
| | CPF_2036 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239. (160 aa) |
| | CPF_2031 | Conserved hypothetical protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (137 aa) |
| | udk | Uridine kinase; Identified by similarity to SP:O32033; match to protein family HMM PF00485; match to protein family HMM TIGR00235. (208 aa) |
| | CPF_2013 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. (90 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (731 aa) |
| | rpmB | 50S ribosomal protein L28; Identified by similarity to SP:P37807; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (63 aa) |
| | CPF_2294 | Hypothetical protein; Identified by glimmer; putative; Belongs to the bacterial ribosomal protein bL25 family. (89 aa) |
| | rpmH | 50S ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | CPF_2987 | Stage 0 sporulation protein J; Identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (286 aa) |
| | CPF_2986 | Conserved hypothetical protein; Identified by similarity to GB:AAO34756.1. (165 aa) |
| | rpsF | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (95 aa) |
| | rpsR | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (80 aa) |
| | dnaB-2 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (444 aa) |
| | CPF_2940 | Putative DNA replication protein DnaC; Identified by similarity to SP:P07905. (331 aa) |
| | CPF_2939 | Putative DNA replication protein DnaD; Identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446. (333 aa) |
| | CPF_2932 | Identified by match to protein family HMM PF00753. (263 aa) |
| | CPF_2906 | Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa) |
| | CPF_2889 | Identified by match to protein family HMM PF00717; match to protein family HMM PF01381. (223 aa) |
| | CPF_2852 | ABC1 domain protein; Identified by match to protein family HMM PF03109. (537 aa) |
| | rnmV | Primase homolog; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (182 aa) |
| | add | Adenosine deaminase; Identified by similarity to SP:P22333; match to protein family HMM PF00962; match to protein family HMM TIGR01430; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily. (332 aa) |
| | hup | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa) |
| | CPF_2797 | Identified by match to protein family HMM PF00575. (134 aa) |
| | fhs | Formate--tetrahydrofolate ligase; Identified by similarity to SP:P13419; match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. (556 aa) |
| | CPF_2783 | Putative dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (326 aa) |
| | CPF_2775 | Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF06968. (347 aa) |
| | CPF_2766 | Conserved hypothetical protein; Identified by similarity to GB:AAO34865.1. (165 aa) |
| | CPF_2765 | Amidohydrolase homolog; Belongs to the peptidase M20A family. (389 aa) |
| | CPF_2755 | Putative zinc-dependent hydrolase. (217 aa) |
| | mcsB | ATP:guanido phosphotransferase domain protein; Catalyzes the specific phosphorylation of arginine residues in proteins; Belongs to the ATP:guanido phosphotransferase family. (337 aa) |
| | mrnC | Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (136 aa) |
| | rpmG | 50S ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | rplK | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rplA | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa) |
| | rplJ | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (166 aa) |
| | rplL | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (121 aa) |
| | rpsL | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. (126 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsJ | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (209 aa) |
| | rplD | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (204 aa) |
| | rplW | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (97 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa) |
| | rpsS | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa) |
| | rplV | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (111 aa) |
| | rpsC | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (222 aa) |
| | rplP | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (144 aa) |
| | rpmC | 50S ribosomal protein L29; Identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family. (69 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (104 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rpsN | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplF | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (179 aa) |
| | rplR | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (119 aa) |
| | rpsE | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (165 aa) |
| | rpmD | 50S ribosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308. (57 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (216 aa) |
| | CPF_2691 | Conserved hypothetical protein; Identified by similarity to PIR:G97282. (102 aa) |
| | rpmJ | 50S ribosomal protein L36; Identified by similarity to SP:P20278; match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (121 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (131 aa) |
| | rpsD-2 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa) |
| | rplQ | 50S ribosomal protein L17; Identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059. (113 aa) |
| | CPF_1415 | Amidohydrolase family protein; Identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. (398 aa) |
| | mgtE | Magnesium transporter; Acts as a magnesium transporter. (445 aa) |
| | CPF_1482 | Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (321 aa) |
| | CPF_1499 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (329 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (209 aa) |
| | CPF_1530 | CBS domain/MgtE intracellular domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239. (423 aa) |
| | recQ-2 | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (592 aa) |
| | CPF_1554 | Identified by match to protein family HMM PF00485. (551 aa) |
| | CPF_1559 | Putative adenylate cyclase; Identified by match to protein family HMM PF01928. (187 aa) |
| | dnaB | Replicative DNA helicase; Identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796. (427 aa) |
| | CPF_1598 | Conserved hypothetical protein; Identified by similarity to GB:AAL96804.1; match to protein family HMM PF09524; match to protein family HMM TIGR02220. (246 aa) |
| | CPF_1602 | Conserved domain protein; Identified by similarity to GB:AAL80538.1. (165 aa) |
| | CPF_1604 | Identified by match to protein family HMM PF01381. (114 aa) |
| | rnz | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (316 aa) |
| | CPF_1629 | Transposase, IS605 OrfB family; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766. (387 aa) |
| | CPF_1650 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. (528 aa) |
| | CPF_1656 | Putative peptidase; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; match to protein family HMM PF08367. (973 aa) |
| | CPF_1667 | Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212. (381 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (400 aa) |
| | CPF_1703 | Putative ribonuclease HI; Identified by match to protein family HMM PF00075. (209 aa) |
| | CPF_1705 | Identified by match to protein family HMM PF01694. (342 aa) |
| | topB | DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] (731 aa) |
| | CPF_1768 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271. (405 aa) |
| | CPF_1782 | Fructokinase; Identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294. (315 aa) |
| | CPF_1785 | PTS system, sucrose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996. (450 aa) |
| | CPF_1793 | Conserved hypothetical protein. (376 aa) |
| | bioB | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (319 aa) |
| | CPF_1810 | Identified by similarity to SP:P22871; match to protein family HMM TIGR02734. (499 aa) |
| | CPF_1826 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. (305 aa) |
| | CPF_1878 | Helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455. (1084 aa) |
| | atpB-2 | V-type ATPase, B subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit. (460 aa) |
| | atpF-2 | V-type ATPase, G subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. (105 aa) |
| | CPF_1892 | V-type ATPase, C subunit; Identified by match to protein family HMM PF01992. (335 aa) |
| | CPF_1896 | ATP synthase homolog; Identified by similarity to SP:P00859; match to protein family HMM TIGR02926. (108 aa) |
| | CPF_1903 | Bacterial transferase hexpeptide repeat protein; Identified by match to protein family HMM PF00132. (167 aa) |
| | CPF_1933 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. (91 aa) |
| | rpsO | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (87 aa) |
| | ribF | Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family. (309 aa) |
| | CPF_1938 | Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. (317 aa) |
| | CPF_1941 | Ribosomal protein, L7Ae family; Identified by match to protein family HMM PF01248. (100 aa) |
| | rpsB | 30S ribosomal protein S2; Identified by similarity to SP:P21464; match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. (233 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (700 aa) |
| | CPF_1961 | GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (281 aa) |
| | rplS | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa) |
| | rpsP | 30S ribosomal protein S16; Identified by similarity to SP:P21474; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (81 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1185 aa) |
| | rpmF | 50S ribosomal protein L32; Identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. (60 aa) |
| | ackA-2 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa) |
| | trx-2 | Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. (104 aa) |
| | CPF_2644 | Conserved hypothetical protein; Identified by similarity to GB:AAM05996.1; match to protein family HMM PF01987. (279 aa) |
| | CPF_2639 | Conserved domain protein; Identified by similarity to GB:AAO79146.1. (430 aa) |
| | CPF_2637 | Identified by match to protein family HMM PF02915. (174 aa) |
| | bcd | butyryl-CoA dehydrogenase; Identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (379 aa) |
| | CPF_2582 | Electron transfer flavoprotein, alpha subunit/FixB family protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012. (335 aa) |
| | hbd | 3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P52041; match to protein family HMM PF00725; match to protein family HMM PF02737. (282 aa) |
| | CPF_2577 | Putative 8-oxoguanine DNA glycosylase; Identified by match to protein family HMM PF00730; match to protein family HMM PF07934. (312 aa) |
| | CPF_2576 | Conserved hypothetical protein; Identified by similarity to GB:AAV96664.1. (101 aa) |
| | guaB | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (484 aa) |
| | CPF_2552 | Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (325 aa) |
| | CPF_2551 | Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (322 aa) |
| | ispE | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (288 aa) |
| | rpmE | 50S ribosomal protein L31; Binds the 23S rRNA. (68 aa) |
| | raiA | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (179 aa) |
| | CPF_2427 | Identified by match to protein family HMM PF04389. (447 aa) |
| | CPF_2416 | Identified by match to protein family HMM PF00149. (379 aa) |
| | ptsG | PTS system, glucose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02002. (509 aa) |
| | CPF_2405 | Identified by match to protein family HMM PF00575. (378 aa) |
| | CPF_2399 | DNA repair protein, RadC family; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family. (227 aa) |
| | rplU | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | rpmA | 50S ribosomal protein L27; Identified by similarity to SP:P05657; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family. (100 aa) |
| | nadD | Nicotinate nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (202 aa) |
| | CPF_2337 | Putative alpha-mannosidase; Identified by similarity to GB:BAB40444.2; match to protein family HMM PF01074; match to protein family HMM PF07748; match to protein family HMM PF09261. (1044 aa) |
| | CPF_2326 | DNA topoisomerase, GyrB/ParE subunit family; Identified by similarity to SP:Q59961; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518. (648 aa) |
| | CPF_2311 | ATPase, P-type (transporting), HAD superfamily, subfamily IC; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494. (849 aa) |
| | rpsT | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa) |
| | rpsD | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (197 aa) |
| | rpsI | 30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | rplM | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (144 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (361 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (638 aa) |
| | tadA | Cytidine/deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (143 aa) |
| | selO | Conserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). (490 aa) |
| | CPF_0053 | Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (112 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | CPF_0060 | Aminotransferase, class V; Identified by match to protein family HMM PF00266. (358 aa) |
| | CPF_0064 | Identified by match to protein family HMM PF00899. (253 aa) |
| | CPF_0067 | Deoxyguanosine kinase/deoxyadenosine kinase; Identified by similarity to SP:Q59484; match to protein family HMM PF01712. (203 aa) |
| | nagE | PTS system, N-acetylglucosamine-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998. (481 aa) |
| | iolC | Myo-inositol catabolism protein IolC; Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5-dehydro-2- deoxy-D-gluconate (DKGP). (338 aa) |
| | CPF_0092 | butyryl-CoA dehydrogenase; Identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (378 aa) |
| | gldA | Glycerol dehydrogenase; Identified by similarity to SP:P32665; match to protein family HMM PF00465; match to protein family HMM PF01761. (376 aa) |
| | CPF_0116 | Sensor histidine kinase; Identified by match to protein family HMM PF02518. (337 aa) |
| | kptA | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (186 aa) |
| | CPF_0175 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (341 aa) |
| | CPF_0205 | Heme oxygenase; Identified by match to protein family HMM PF01126. (214 aa) |
| | sbcD | Putative nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (407 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa) |
| | cobB-2 | NAD-dependent deacetylase, Sir2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (243 aa) |
| | cutC | CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (207 aa) |
| | CPF_0261 | Antioxidant, AhpC/TSA family; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534. (155 aa) |
| | CPF_0292 | Putative transketolase, N-terminal subunit; Identified by similarity to SP:Q58094; match to protein family HMM PF00456. (274 aa) |
| | CPF_0304 | Putative lipase; Identified by similarity to GB:AAL47055.1. (334 aa) |
| | CPF_0309 | Electron transfer flavoprotein, alpha subunit/FixB family protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012. (397 aa) |
| | CPF_0317 | Cation-transporting ATPase, P-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494. (885 aa) |
| | CPF_0318 | Conserved hypothetical protein TIGR00266; Identified by similarity to GB:BAD77164.1; match to protein family HMM PF01987; match to protein family HMM TIGR00266. (265 aa) |
| | ogt | methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (158 aa) |
| | recQ | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (724 aa) |
| | CPF_0329 | Identified by match to protein family HMM PF02274. (265 aa) |
| | CPF_0348 | Conserved domain protein; Identified by similarity to GB:AAP09652.1. (259 aa) |
| | CPF_0353 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (265 aa) |
| | CPF_0371 | Conserved hypothetical protein; Identified by similarity to GB:AAN83046.1. (356 aa) |
| | CPF_0379 | Identified by match to protein family HMM PF00149. (277 aa) |
| | nadC | Nicotinate-nucleotide diphosphorylase (carboxylating); Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family. (279 aa) |
| | CPF_0398 | Kinase, pfkB family; Identified by match to protein family HMM PF00294. (339 aa) |
| | CPF_0422 | PTS system, IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003. (551 aa) |
| | CPF_0428 | Conserved hypothetical protein; Identified by similarity to PIR:AG1527; match to protein family HMM PF06824. (427 aa) |
| | CPF_0433 | Conserved hypothetical protein; Identified by similarity to GB:AAP09437.1. (280 aa) |
| | speB | Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family. (285 aa) |
| | treB | PTS system, trehalose-specific IIBC component; Identified by similarity to SP:P36672; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992. (473 aa) |
| | CPF_0551 | Conserved hypothetical protein TIGR00149; Identified by similarity to GB:BAD76119.1; match to protein family HMM PF01894; match to protein family HMM TIGR00149. (135 aa) |
| | CPF_0575 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. (179 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (431 aa) |
| | CPF_0586 | Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (393 aa) |
| | CPF_0637 | Conserved hypothetical protein; Identified by similarity to PIR:C97129; match to protein family HMM PF07728. (371 aa) |
| | CPF_0643 | Conserved hypothetical protein; Identified by similarity to GB:AAL23202.1. (354 aa) |
| | araD | L-ribulose-5-phosphate 4-epimerase; Identified by similarity to SP:P39306; match to protein family HMM PF00596; match to protein family HMM TIGR00760. (232 aa) |
| | CPF_0652 | F5/8 type C domain protein; Identified by match to protein family HMM PF00754. (436 aa) |
| | CPF_0665 | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. (361 aa) |
| | CPF_0667 | Putative membrane protein. (244 aa) |
| | purF | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (473 aa) |
| | purD | Phosphoribosylamine--glycine ligase; Identified by similarity to SP:P12039; match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family. (416 aa) |
| | CPF_0711 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (167 aa) |
| | CPF_0723 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. (275 aa) |
| | scrK | Fructokinase; Identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294. (310 aa) |
| | trx | Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. (104 aa) |
| | CPF_0740 | Alpha/beta hydrolase fold family protein; Identified by match to protein family HMM PF07859. (573 aa) |
| | CPF_0749 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. (164 aa) |
| | CPF_0792 | Identified by match to protein family HMM PF02678; match to protein family HMM PF05726; Belongs to the pirin family. (293 aa) |
| | CPF_0837 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (336 aa) |
| | CPF_0845 | Aminotransferase, class V; Identified by match to protein family HMM PF00266. (380 aa) |
| | CPF_0848 | Glycosyl hydrolase, family 38; Identified by match to protein family HMM PF01074; match to protein family HMM PF07748; match to protein family HMM PF09261. (1022 aa) |
| | deaD | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes. (478 aa) |
| | CPF_0871 | Transposase, IS605 OrfB family; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766. (390 aa) |
| | CPF_0873 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (180 aa) |
| | eutS | Ethanolamine utilization protein EutS; Identified by match to protein family HMM PF00936. (116 aa) |
| | eutP | Ethanolamine utilization protein, EutP; Identified by similarity to GB:AAN81436.1; match to protein family HMM TIGR02528; Belongs to the EutP/PduV family. (144 aa) |
| | eutA | Ethanolamine utilization protein EutA; Identified by similarity to SP:Q9ZFV2; match to protein family HMM PF06277. (477 aa) |
| | eutC | Ethanolamine ammonia-lyase, small subunit; Identified by similarity to SP:P19636; match to protein family HMM PF05985; Belongs to the EutC family. (295 aa) |
| | eutL | Ethanolamine utilization protein EutL; Identified by similarity to SP:Q9ZFU9; match to protein family HMM PF00936. (217 aa) |
| | CPF_0894 | Ethanolamine utilization protein; Identified by similarity to GB:AAL94295.1; match to protein family HMM PF00936. (254 aa) |
| | eutM | Ethanolamine utilization protein EutM; Identified by similarity to SP:P41791; match to protein family HMM PF00936. (96 aa) |
| | eutT | cob(I)yrinic acid a,c-diamide adenosyltransferase; Identified by similarity to SP:Q9ZFV4; match to protein family HMM PF01923. (258 aa) |
| | CPF_0898 | Ethanolamine utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (211 aa) |
| | CPF_0900 | Ethanolamine utilization protein EutN; Identified by similarity to SP:P41792; match to protein family HMM PF03319. (90 aa) |
| | CPF_0901 | Ethanolamine utilization protein; Identified by similarity to GB:AAO36657.1; match to protein family HMM PF00936; match to protein family HMM TIGR02526. (184 aa) |
| | CPF_0903 | Ethanolamine utilization protein EutQ; Identified by match to protein family HMM PF05899; match to protein family HMM PF06249. (157 aa) |
| | CPF_0928 | Transcriptional regulator, Cro/CI family; Identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381. (167 aa) |
| | CPF_0947 | Conserved domain protein; Identified by similarity to GB:AAK03168.1. (391 aa) |
| | CPF_0980 | Conserved hypothetical protein; Identified by similarity to GB:AAK75063.1; match to protein family HMM PF08020. (172 aa) |
| | CPF_0981 | Conserved hypothetical protein; Identified by similarity to GB:CAA15293.1. (280 aa) |
| | CPF_1002 | Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. (408 aa) |
| | CPF_1008 | Transposase, IS605 OrfB family; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766. (387 aa) |
| | CPF_1013 | Conserved hypothetical protein; Identified by similarity to GB:AAP27270.1. (97 aa) |
| | CPF_1021 | Identified by match to protein family HMM PF01381. (180 aa) |
| | CPF_1039 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. (231 aa) |
| | fucA | L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596. (234 aa) |
| | CPF_1061 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (152 aa) |
| | CPF_1070 | PTS system, N-acetylglucosamine-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998. (483 aa) |
| | truA2 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (244 aa) |
| | CPF_1144 | Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (289 aa) |
| | CPF_1146 | Conserved hypothetical protein; Identified by similarity to GB:AAM32443.1. (415 aa) |
| | CPF_1148 | Putative helicase; Identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455. (1069 aa) |
| | mgtA | Magnesium-translocating P-type ATPase; Identified by similarity to PIR:B39083; match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524. (889 aa) |
| | CPF_1157 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (168 aa) |
| | CPF_1167 | Hypothetical protein; Identified by glimmer; putative. (137 aa) |
| | dhaB | Glycerol dehydratase, large subunit; Identified by similarity to SP:P45514; match to protein family HMM PF02286. (554 aa) |
| | dhaC | Glycerol dehydratase, medium subunit; Identified by similarity to GB:AAB48851.1; match to protein family HMM PF02288. (188 aa) |
