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| | rpsB | 30S ribosomal protein S2; Identified by similarity to SP:P21464; match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. (233 aa) |
| | CPF_1941 | Ribosomal protein, L7Ae family; Identified by match to protein family HMM PF01248. (100 aa) |
| | CPF_1938 | Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. (317 aa) |
| | rpsO | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (87 aa) |
| | CPF_1903 | Bacterial transferase hexpeptide repeat protein; Identified by match to protein family HMM PF00132. (167 aa) |
| | CPF_1878 | Helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455. (1084 aa) |
| | CPF_1810 | Identified by similarity to SP:P22871; match to protein family HMM TIGR02734. (499 aa) |
| | CPF_1793 | Conserved hypothetical protein. (376 aa) |
| | topB | DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] (731 aa) |
| | CPF_1768 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271. (405 aa) |
| | CPF_1650 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. (528 aa) |
| | CPF_1604 | Identified by match to protein family HMM PF01381. (114 aa) |
| | CPF_1598 | Conserved hypothetical protein; Identified by similarity to GB:AAL96804.1; match to protein family HMM PF09524; match to protein family HMM TIGR02220. (246 aa) |
| | dnaB | Replicative DNA helicase; Identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796. (427 aa) |
| | CPF_1559 | Putative adenylate cyclase; Identified by match to protein family HMM PF01928. (187 aa) |
| | CPF_1554 | Identified by match to protein family HMM PF00485. (551 aa) |
| | recQ-2 | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (592 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (209 aa) |
| | CPF_1499 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (329 aa) |
| | CPF_1482 | Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (321 aa) |
| | CPF_1322 | Identified by match to protein family HMM PF00383. (166 aa) |
| | CPF_1178 | Putative ATP:cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family. (170 aa) |
| | dhaG | Glycerol dehydratase reactivation factor, small subunit. (116 aa) |
| | dhaE | Glycerol dehydratase, small subunit; Identified by similarity to GB:AAC27924.1; match to protein family HMM PF02287. (141 aa) |
| | dhaC | Glycerol dehydratase, medium subunit; Identified by similarity to GB:AAB48851.1; match to protein family HMM PF02288. (188 aa) |
| | dhaB | Glycerol dehydratase, large subunit; Identified by similarity to SP:P45514; match to protein family HMM PF02286. (554 aa) |
| | CPF_1167 | Hypothetical protein; Identified by glimmer; putative. (137 aa) |
| | CPF_1148 | Putative helicase; Identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455. (1069 aa) |
| | CPF_1146 | Conserved hypothetical protein; Identified by similarity to GB:AAM32443.1. (415 aa) |
| | fucA | L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596. (234 aa) |
| | CPF_1021 | Identified by match to protein family HMM PF01381. (180 aa) |
| | CPF_1013 | Conserved hypothetical protein; Identified by similarity to GB:AAP27270.1. (97 aa) |
| | CPF_0947 | Conserved domain protein; Identified by similarity to GB:AAK03168.1. (391 aa) |
| | CPF_0928 | Transcriptional regulator, Cro/CI family; Identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381. (167 aa) |
| | CPF_0903 | Ethanolamine utilization protein EutQ; Identified by match to protein family HMM PF05899; match to protein family HMM PF06249. (157 aa) |
| | CPF_0901 | Ethanolamine utilization protein; Identified by similarity to GB:AAO36657.1; match to protein family HMM PF00936; match to protein family HMM TIGR02526. (184 aa) |
| | CPF_0900 | Ethanolamine utilization protein EutN; Identified by similarity to SP:P41792; match to protein family HMM PF03319. (90 aa) |
| | CPF_0898 | Ethanolamine utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (211 aa) |
| | eutT | cob(I)yrinic acid a,c-diamide adenosyltransferase; Identified by similarity to SP:Q9ZFV4; match to protein family HMM PF01923. (258 aa) |
| | eutM | Ethanolamine utilization protein EutM; Identified by similarity to SP:P41791; match to protein family HMM PF00936. (96 aa) |
| | CPF_0894 | Ethanolamine utilization protein; Identified by similarity to GB:AAL94295.1; match to protein family HMM PF00936. (254 aa) |
| | eutL | Ethanolamine utilization protein EutL; Identified by similarity to SP:Q9ZFU9; match to protein family HMM PF00936. (217 aa) |
| | eutC | Ethanolamine ammonia-lyase, small subunit; Identified by similarity to SP:P19636; match to protein family HMM PF05985; Belongs to the EutC family. (295 aa) |
| | eutA | Ethanolamine utilization protein EutA; Identified by similarity to SP:Q9ZFV2; match to protein family HMM PF06277. (477 aa) |
| | eutP | Ethanolamine utilization protein, EutP; Identified by similarity to GB:AAN81436.1; match to protein family HMM TIGR02528; Belongs to the EutP/PduV family. (144 aa) |
| | eutS | Ethanolamine utilization protein EutS; Identified by match to protein family HMM PF00936. (116 aa) |
| | deaD | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes. (478 aa) |
| | CPF_0837 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (336 aa) |
| | trx | Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. (104 aa) |
| | CPF_0665 | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. (361 aa) |
| | araD | L-ribulose-5-phosphate 4-epimerase; Identified by similarity to SP:P39306; match to protein family HMM PF00596; match to protein family HMM TIGR00760. (232 aa) |
| | CPF_0637 | Conserved hypothetical protein; Identified by similarity to PIR:C97129; match to protein family HMM PF07728. (371 aa) |
| | CPF_0433 | Conserved hypothetical protein; Identified by similarity to GB:AAP09437.1. (280 aa) |
| | CPF_0379 | Identified by match to protein family HMM PF00149. (277 aa) |
| | CPF_0348 | Conserved domain protein; Identified by similarity to GB:AAP09652.1. (259 aa) |
| | recQ | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (724 aa) |
| | CPF_0318 | Conserved hypothetical protein TIGR00266; Identified by similarity to GB:BAD77164.1; match to protein family HMM PF01987; match to protein family HMM TIGR00266. (265 aa) |
| | cutC | CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (207 aa) |
| | cobB-2 | NAD-dependent deacetylase, Sir2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (243 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa) |
| | CPF_0116 | Sensor histidine kinase; Identified by match to protein family HMM PF02518. (337 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | CPF_0053 | Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (112 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (638 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (361 aa) |
| | rpmH | 50S ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | CPF_2987 | Stage 0 sporulation protein J; Identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (286 aa) |
| | CPF_2986 | Conserved hypothetical protein; Identified by similarity to GB:AAO34756.1. (165 aa) |
| | rpsF | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (95 aa) |
| | rpsR | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (80 aa) |
| | dnaB-2 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (444 aa) |
| | CPF_2940 | Putative DNA replication protein DnaC; Identified by similarity to SP:P07905. (331 aa) |
| | CPF_2939 | Putative DNA replication protein DnaD; Identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446. (333 aa) |
| | rnmV | Primase homolog; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (182 aa) |
| | hup | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa) |
| | CPF_2797 | Identified by match to protein family HMM PF00575. (134 aa) |
| | CPF_2783 | Putative dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (326 aa) |
| | CPF_2766 | Conserved hypothetical protein; Identified by similarity to GB:AAO34865.1. (165 aa) |
| | rpmG | 50S ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | rplK | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rplA | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa) |
| | rplJ | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (166 aa) |
| | rplL | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (121 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsJ | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (209 aa) |
| | rplW | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (97 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa) |
| | rpsS | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa) |
| | rpsC | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (222 aa) |
| | rpmC | 50S ribosomal protein L29; Identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family. (69 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (104 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rpsN | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplR | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (119 aa) |
| | rpsE | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (165 aa) |
| | rpmD | 50S ribosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308. (57 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmJ | 50S ribosomal protein L36; Identified by similarity to SP:P20278; match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (121 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (131 aa) |
| | rplQ | 50S ribosomal protein L17; Identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059. (113 aa) |
| | rplM | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (144 aa) |
| | rpsI | 30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | trx-2 | Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. (104 aa) |
| | CPF_2644 | Conserved hypothetical protein; Identified by similarity to GB:AAM05996.1; match to protein family HMM PF01987. (279 aa) |
| | CPF_2639 | Conserved domain protein; Identified by similarity to GB:AAO79146.1. (430 aa) |
| | CPF_2637 | Identified by match to protein family HMM PF02915. (174 aa) |
| | CPF_2552 | Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (325 aa) |
| | CPF_2551 | Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (322 aa) |
| | rpmE | 50S ribosomal protein L31; Binds the 23S rRNA. (68 aa) |
| | raiA | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (179 aa) |
| | CPF_2405 | Identified by match to protein family HMM PF00575. (378 aa) |
| | CPF_2399 | DNA repair protein, RadC family; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family. (227 aa) |
| | rplU | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | rpmA | 50S ribosomal protein L27; Identified by similarity to SP:P05657; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family. (100 aa) |
| | CPF_2326 | DNA topoisomerase, GyrB/ParE subunit family; Identified by similarity to SP:Q59961; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518. (648 aa) |
| | rpsT | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa) |
| | CPF_2294 | Hypothetical protein; Identified by glimmer; putative; Belongs to the bacterial ribosomal protein bL25 family. (89 aa) |
| | rpsU | 30S ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. (58 aa) |
| | CPF_2274 | Identified by similarity to SP:P19638; match to protein family HMM PF01219; match to protein family HMM PF01569. (232 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (225 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (595 aa) |
| | CPF_2238 | DNA topoisomerase; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751. (720 aa) |
| | CPF_2234 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515. (272 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa) |
| | CPF_2176 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (116 aa) |
| | CPF_2158 | Conserved hypothetical protein; Identified by similarity to GB:AAS43311.1; match to protein family HMM PF08241; match to protein family HMM PF08242. (245 aa) |
| | rpmI | 50S ribosomal protein L35; Identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | CPF_2138 | Hypothetical protein; Identified by glimmer; putative. (451 aa) |
| | rplY | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (202 aa) |
| | CPF_2126 | TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (365 aa) |
| | CPF_2123 | Methenyltetrahydrofolate cyclohydrolase; Identified by match to protein family HMM PF04961. (211 aa) |
| | CPF_2106 | S4 domain protein; Identified by match to protein family HMM PF01479. (253 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (565 aa) |
| | udk | Uridine kinase; Identified by similarity to SP:O32033; match to protein family HMM PF00485; match to protein family HMM TIGR00235. (208 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (731 aa) |
| | rpmB | 50S ribosomal protein L28; Identified by similarity to SP:P37807; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (63 aa) |
| | ackA-2 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa) |
| | rpmF | 50S ribosomal protein L32; Identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. (60 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1185 aa) |
| | rpsP | 30S ribosomal protein S16; Identified by similarity to SP:P21474; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (81 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (700 aa) |
