(6 nodes) Glycosyl hydrolase family 20, domain 2 network (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CPF_0875	Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167. (1296 aa)
	nagH	Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555. (1627 aa)
	CPF_1238	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00728. (610 aa)
	nagJ	O-GlcNAcase nagJ; Binds carbohydrates. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins. Can bind and deglycosylate O-glycosylated peptides from mammals. Belongs to the glycosyl hydrolase 84 family. (1001 aa)
	CPF_1487	Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167. (1172 aa)
	CPF_1614	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754. (1471 aa)

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0875	CPF_1487	CPF_0875	CPF_1487	Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	0.688
CPF_0875	CPF_1614	CPF_0875	CPF_1614	Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.	0.760
CPF_0875	nagH	CPF_0875	CPF_0184	Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555.	0.690
CPF_1487	CPF_0875	CPF_1487	CPF_0875	Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	0.688
CPF_1487	CPF_1614	CPF_1487	CPF_1614	Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.	0.772
CPF_1487	nagJ	CPF_1487	CPF_1442	Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	O-GlcNAcase nagJ; Binds carbohydrates. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins. Can bind and deglycosylate O-glycosylated peptides from mammals. Belongs to the glycosyl hydrolase 84 family.	0.572
CPF_1614	CPF_0875	CPF_1614	CPF_0875	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.	Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	0.760
CPF_1614	CPF_1487	CPF_1614	CPF_1487	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.	Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	0.772
CPF_1614	nagH	CPF_1614	CPF_0184	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.	Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555.	0.770
nagH	CPF_0875	CPF_0184	CPF_0875	Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555.	Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	0.690
nagH	CPF_1614	CPF_0184	CPF_1614	Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555.	Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.	0.770
nagH	nagJ	CPF_0184	CPF_1442	Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555.	O-GlcNAcase nagJ; Binds carbohydrates. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins. Can bind and deglycosylate O-glycosylated peptides from mammals. Belongs to the glycosyl hydrolase 84 family.	0.955
nagJ	CPF_1487	CPF_1442	CPF_1487	O-GlcNAcase nagJ; Binds carbohydrates. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins. Can bind and deglycosylate O-glycosylated peptides from mammals. Belongs to the glycosyl hydrolase 84 family.	Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167.	0.572
nagJ	nagH	CPF_1442	CPF_0184	O-GlcNAcase nagJ; Binds carbohydrates. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins. Can bind and deglycosylate O-glycosylated peptides from mammals. Belongs to the glycosyl hydrolase 84 family.	Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555.	0.955