STRINGSTRING
GCA_000715605_05236 GCA_000715605_05236 GCA_000715605_05990 GCA_000715605_05990 hepT_1 hepT_1 ispB_2 ispB_2 crtB_2 crtB_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000715605_05236Trans,polycis-polyprenyl diphosphate synthase ((2Z,6E)-farnesyl diphosphate specific). (278 aa)
GCA_000715605_05990(2E,6E)-farnesyl diphosphate synthase. (181 aa)
hepT_1Heptaprenyl diphosphate synthase component 2. (336 aa)
ispB_2Octaprenyl diphosphate synthase. (392 aa)
crtB_2Phytoene synthase. (316 aa)
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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