STRINGSTRING
menJ_1 menJ_1 moaA1 moaA1 menJ_3 menJ_3 menG_4 menG_4 ptlI_1 ptlI_1 GCA_000715605_07167 GCA_000715605_07167 menA menA GCA_000715605_06997 GCA_000715605_06997 menG_3 menG_3 mqnC mqnC GCA_000715605_05958 GCA_000715605_05958 GCA_000715605_04657 GCA_000715605_04657 GCA_000715605_02764 GCA_000715605_02764 ssgB_3 ssgB_3 GCA_000715605_03993 GCA_000715605_03993 add2 add2 cyoE cyoE dnrC dnrC mqnA mqnA ptlI_2 ptlI_2 ubiD ubiD plqA plqA mqnE mqnE mqnB mqnB mqnD mqnD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
menJ_1Menaquinone reductase. (427 aa)
moaA1GTP 3',8-cyclase 1. (340 aa)
menJ_3Menaquinone reductase. (410 aa)
menG_4Demethylmenaquinone methyltransferase. (243 aa)
ptlI_1Pentalenene oxygenase. (336 aa)
GCA_000715605_07167Hypothetical protein. (158 aa)
menA1,4-dihydroxy-2-naphthoate octaprenyltransferase. (310 aa)
GCA_000715605_06997Hypothetical protein. (373 aa)
menG_3Demethylmenaquinone methyltransferase. (231 aa)
mqnCCyclic dehypoxanthine futalosine synthase. (399 aa)
GCA_000715605_05958Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase. (456 aa)
GCA_000715605_04657Hypothetical protein. (146 aa)
GCA_000715605_02764Hypothetical protein. (62 aa)
ssgB_3Sporulation-specific cell division protein SsgB. (137 aa)
GCA_000715605_03993Hypothetical protein. (357 aa)
add2Aminodeoxyfutalosine deaminase. (355 aa)
cyoEProtoheme IX farnesyltransferase. (333 aa)
dnrCAklanonic acid methyltransferase DnrC. (287 aa)
mqnAChorismate dehydratase. (1042 aa)
ptlI_2Pentalenene oxygenase. (489 aa)
ubiD3-octaprenyl-4-hydroxybenzoate carboxy-lyase. (265 aa)
plqA4-hydroxybenzoate solanesyltransferase. (306 aa)
mqnEAminodeoxyfutalosine synthase. (387 aa)
mqnBFutalosine hydrolase. (252 aa)
mqnD1,4-dihydroxy-6-naphtoate synthase. (145 aa)
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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