STRINGSTRING
lagD lagD hrp1_6 hrp1_6 cyc1 cyc1 cyc2 cyc2 hrp1_1 hrp1_1 apxIB apxIB GCA_000715605_08005 GCA_000715605_08005 hrp1_2 hrp1_2 hrp1_3 hrp1_3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lagDLactococcin-G-processing and transport ATP-binding protein LagD. (721 aa)
hrp1_6Hypoxic response protein 1. (134 aa)
cyc1Epi-isozizaene synthase. (337 aa)
cyc2Germacradienol/geosmin synthase. (718 aa)
hrp1_1Hypoxic response protein 1. (142 aa)
apxIBToxin RTX-I translocation ATP-binding protein. (220 aa)
GCA_000715605_08005Germacrene A synthase. (323 aa)
hrp1_2Hypoxic response protein 1. (154 aa)
hrp1_3Hypoxic response protein 1. (141 aa)
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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