(8 nodes) Zeta DNA polymerase complex, and impB/mucB/samB family C-terminal domain network (Laodelphax striatellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A482WL41	UmuC domain-containing protein. (852 aa)
	A0A482WXH1	HORMA domain-containing protein. (216 aa)
	A0A482X673	DNA polymerase. (765 aa)
	A0A482X9M9	DNA polymerase. (1104 aa)
	A0A482XEL4	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1049 aa)
	A0A482XQR5	Uncharacterized protein. (469 aa)
	A0A482XRX1	DNA_pol_B_exo1 domain-containing protein. (113 aa)
	A0A482XUA7	Uncharacterized protein. (472 aa)

Your Current Organism:

Laodelphax striatellus

NCBI taxonomy Id: 195883
Other names: L. striatellus, Laodelphax striatella, small brown planthopper

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A482WL41	A0A482WXH1	UmuC domain-containing protein.	HORMA domain-containing protein.	0.967
A0A482WL41	A0A482X673	UmuC domain-containing protein.	DNA polymerase.	0.908
A0A482WL41	A0A482X9M9	UmuC domain-containing protein.	DNA polymerase.	0.900
A0A482WL41	A0A482XEL4	UmuC domain-containing protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.993
A0A482WL41	A0A482XQR5	UmuC domain-containing protein.	Uncharacterized protein.	0.846
A0A482WL41	A0A482XRX1	UmuC domain-containing protein.	DNA_pol_B_exo1 domain-containing protein.	0.908
A0A482WL41	A0A482XUA7	UmuC domain-containing protein.	Uncharacterized protein.	0.761
A0A482WXH1	A0A482WL41	HORMA domain-containing protein.	UmuC domain-containing protein.	0.967
A0A482WXH1	A0A482X673	HORMA domain-containing protein.	DNA polymerase.	0.968
A0A482WXH1	A0A482X9M9	HORMA domain-containing protein.	DNA polymerase.	0.937
A0A482WXH1	A0A482XEL4	HORMA domain-containing protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.996
A0A482WXH1	A0A482XQR5	HORMA domain-containing protein.	Uncharacterized protein.	0.978
A0A482WXH1	A0A482XRX1	HORMA domain-containing protein.	DNA_pol_B_exo1 domain-containing protein.	0.968
A0A482WXH1	A0A482XUA7	HORMA domain-containing protein.	Uncharacterized protein.	0.977
A0A482X673	A0A482WL41	DNA polymerase.	UmuC domain-containing protein.	0.908
A0A482X673	A0A482WXH1	DNA polymerase.	HORMA domain-containing protein.	0.968
A0A482X673	A0A482X9M9	DNA polymerase.	DNA polymerase.	0.816
A0A482X673	A0A482XEL4	DNA polymerase.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.968
A0A482X673	A0A482XQR5	DNA polymerase.	Uncharacterized protein.	0.977
A0A482X673	A0A482XRX1	DNA polymerase.	DNA_pol_B_exo1 domain-containing protein.	0.691