(34 nodes) Axonemal dynein complex assembly network (Laodelphax striatellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A482X518	Uncharacterized protein. (194 aa)
	A0A482X4W8	Uncharacterized protein. (634 aa)
	A0A482X4M9	Uncharacterized protein. (177 aa)
	A0A482X417	Uncharacterized protein. (727 aa)
	A0A482X177	LRRcap domain-containing protein. (423 aa)
	A0A482X0T1	Uncharacterized protein. (419 aa)
	A0A482WFR9	Uncharacterized protein. (3222 aa)
	A0A482WGR8	NYD-SP28 domain-containing protein. (482 aa)
	A0A482WLS4	Uncharacterized protein. (842 aa)
	A0A482WNP2	WD_REPEATS_REGION domain-containing protein. (418 aa)
	A0A482WPH9	PIH1_CS domain-containing protein. (214 aa)
	A0A482WPK8	Uncharacterized protein. (302 aa)
	A0A482WQR7	Uncharacterized protein. (486 aa)
	A0A482WR73	WD_REPEATS_REGION domain-containing protein. (599 aa)
	A0A482WR74	Uncharacterized protein. (668 aa)
	A0A482WUY6	Uncharacterized protein. (4617 aa)
	A0A482WF66	Uncharacterized protein. (548 aa)
	A0A482XTZ1	DHC_N2 domain-containing protein. (314 aa)
	A0A482WWQ9	WD_REPEATS_REGION domain-containing protein. (778 aa)
	A0A482WYF8	Uncharacterized protein. (271 aa)
	A0A482XRB3	Uncharacterized protein. (749 aa)
	A0A482XPX0	Uncharacterized protein. (831 aa)
	A0A482XML7	Uncharacterized protein. (1000 aa)
	A0A482XM32	Uncharacterized protein. (151 aa)
	A0A482XLX0	Uncharacterized protein. (560 aa)
	A0A482XKV3	Uncharacterized protein. (248 aa)
	A0A482XH82	Uncharacterized protein. (186 aa)
	A0A482XGP6	DUF4200 domain-containing protein. (586 aa)
	A0A482XAP7	DRBM domain-containing protein. (2116 aa)
	A0A482X9A4	Protein kintoun; Required for cytoplasmic pre-assembly of axonemal dyneins, thereby playing a central role in motility in cilia and flagella. Involved in pre-assembly of dynein arm complexes in the cytoplasm before intraflagellar transport loads them for the ciliary compartment. Belongs to the PIH1 family. Kintoun subfamily. (946 aa)
	A0A482X895	Uncharacterized protein. (565 aa)
	A0A482X7Y8	Dynein assembly factor 1, axonemal homolog. (863 aa)
	A0A482X7L2	MYND-type domain-containing protein. (436 aa)
	A0A482X557	DUF4471 domain-containing protein. (309 aa)

Your Current Organism:

Laodelphax striatellus

NCBI taxonomy Id: 195883
Other names: L. striatellus, Laodelphax striatella, small brown planthopper

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A482WF66	A0A482X0T1	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A482WF66	A0A482XM32	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A482WFR9	A0A482WR73	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.602
A0A482WFR9	A0A482WWQ9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.511
A0A482WFR9	A0A482X177	Uncharacterized protein.	LRRcap domain-containing protein.	0.403
A0A482WFR9	A0A482X417	Uncharacterized protein.	Uncharacterized protein.	0.577
A0A482WFR9	A0A482XAP7	Uncharacterized protein.	DRBM domain-containing protein.	0.478
A0A482WFR9	A0A482XH82	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A482WFR9	A0A482XM32	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A482WFR9	A0A482XML7	Uncharacterized protein.	Uncharacterized protein.	0.559
A0A482WGR8	A0A482WLS4	NYD-SP28 domain-containing protein.	Uncharacterized protein.	0.704
A0A482WGR8	A0A482WQR7	NYD-SP28 domain-containing protein.	Uncharacterized protein.	0.653
A0A482WGR8	A0A482WR73	NYD-SP28 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.484
A0A482WGR8	A0A482WR74	NYD-SP28 domain-containing protein.	Uncharacterized protein.	0.653
A0A482WGR8	A0A482X177	NYD-SP28 domain-containing protein.	LRRcap domain-containing protein.	0.481
A0A482WGR8	A0A482X417	NYD-SP28 domain-containing protein.	Uncharacterized protein.	0.798
A0A482WGR8	A0A482X4W8	NYD-SP28 domain-containing protein.	Uncharacterized protein.	0.440
A0A482WGR8	A0A482X7Y8	NYD-SP28 domain-containing protein.	Dynein assembly factor 1, axonemal homolog.	0.471
A0A482WGR8	A0A482XM32	NYD-SP28 domain-containing protein.	Uncharacterized protein.	0.755
A0A482WGR8	A0A482XPX0	NYD-SP28 domain-containing protein.	Uncharacterized protein.	0.721