(7 nodes) Ribosomal protein network (Pseudomonas floridensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsJ	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
	rpsN	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
	rpsK	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa)
	rpsO	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
	rpsB	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (247 aa)
	rpsI	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa)
	rpsP	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (85 aa)

Your Current Organism:

Pseudomonas floridensis

NCBI taxonomy Id: 1958950
Other names: ATCC TSD-90, LMG 30013, LMG:30013, P. floridensis, Pseudomonas floridae, Pseudomonas floridensis Timilsina et al. 2018, Pseudomonas sp. GEV358, Pseudomonas sp. GEV388, Pseudomonas sp. GEV392, strain GEV388

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsI	BZK31_13635	BZK31_14485	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsB	rpsJ	BZK31_13635	BZK31_08615	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsB	rpsK	BZK31_13635	BZK31_08735	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpsB	rpsN	BZK31_13635	BZK31_08685	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.999
rpsB	rpsO	BZK31_13635	BZK31_09230	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsB	rpsP	BZK31_13635	BZK31_19140	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsI	rpsB	BZK31_14485	BZK31_13635	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsI	rpsJ	BZK31_14485	BZK31_08615	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsI	rpsK	BZK31_14485	BZK31_08735	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpsI	rpsN	BZK31_14485	BZK31_08685	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.999
rpsI	rpsO	BZK31_14485	BZK31_09230	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsI	rpsP	BZK31_14485	BZK31_19140	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsJ	rpsB	BZK31_08615	BZK31_13635	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsJ	rpsI	BZK31_08615	BZK31_14485	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsJ	rpsK	BZK31_08615	BZK31_08735	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpsJ	rpsN	BZK31_08615	BZK31_08685	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.999
rpsJ	rpsO	BZK31_08615	BZK31_09230	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsJ	rpsP	BZK31_08615	BZK31_19140	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsK	rpsB	BZK31_08735	BZK31_13635	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsK	rpsI	BZK31_08735	BZK31_14485	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999

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