STRINGSTRING
OOV99640.1 OOV99640.1 OOV99828.1 OOV99828.1 OOV98387.1 OOV98387.1 OOV97067.1 OOV97067.1 OOV97255.1 OOV97255.1 OOV97296.1 OOV97296.1 OOV97416.1 OOV97416.1 OOV96133.1 OOV96133.1 OOV96418.1 OOV96418.1 OOV94540.1 OOV94540.1 OOV94541.1 OOV94541.1 OOV94542.1 OOV94542.1 secY secY mrdA mrdA OOV94226.1 OOV94226.1 OOV93498.1 OOV93498.1 ftsI ftsI MF4836_26155 MF4836_26155 surA surA OOV91043.1 OOV91043.1 MF4836_32125 MF4836_32125 OOV89599.1 OOV89599.1 mrdA-2 mrdA-2 OOV89219.1 OOV89219.1 OOV89213.1 OOV89213.1 OOV89217.1 OOV89217.1 OOV89038.1 OOV89038.1 OOV88998.1 OOV88998.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OOV99640.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (812 aa)
OOV99828.1Urea ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
OOV98387.1acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
OOV97067.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
OOV97255.1acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
OOV97296.1acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
OOV97416.1Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
OOV96133.1Non-ribosomal peptide synthetase; Catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; Derived by automated computational analysis using gene prediction method: Protein Homology. (4340 aa)
OOV96418.1Penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology. (765 aa)
OOV94540.1Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (909 aa)
OOV94541.1Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (7597 aa)
OOV94542.1Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2137 aa)
secYPreprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (442 aa)
mrdAPenicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (631 aa)
OOV94226.1Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (774 aa)
OOV93498.1Glycosyl transferase family 51; Derived by automated computational analysis using gene prediction method: Protein Homology. (1035 aa)
ftsICell division protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. (575 aa)
MF4836_26155Integrase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
surAPeptidylprolyl isomerase SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. (426 aa)
OOV91043.1Folate-binding protein YgfZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
MF4836_32125Integrase; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (3979 aa)
OOV89599.1Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa)
mrdA-2Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (630 aa)
OOV89219.1Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1182 aa)
OOV89213.1Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2886 aa)
OOV89217.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3446 aa)
OOV89038.1Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)
OOV88998.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
Your Current Organism:
Pseudomonas sp. MF4836
NCBI taxonomy Id: 1960827
Other names: P. sp. MF4836
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