Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAC16951.1 | rph | gene:10740531 | gene:10742839 | Putative ATP-dependent helicase; CE0141, similar to AJ414156-170|CAC92624.1| percent identity: 35 in 796 aa. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.523 |
| BAC16951.1 | rsmA | gene:10740531 | gene:10741378 | Putative ATP-dependent helicase; CE0141, similar to AJ414156-170|CAC92624.1| percent identity: 35 in 796 aa. | Putative dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.466 |
| BAC17138.1 | BAC18629.1 | gene:10740726 | gene:10742247 | Putative ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Putative ATP-dependent helicase; CE1819, similar to AE004217-11|AAF94540.1| percent identity: 48 in 1299 aa. | 0.408 |
| BAC17138.1 | gene:10743306 | gene:10740726 | gene:10743306 | Putative ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Uncharacterized protein. | 0.664 |
| BAC17161.1 | leuS | gene:10740749 | gene:10743298 | Hypothetical protein; CE0351. | Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.445 |
| BAC17161.1 | pheT | gene:10740749 | gene:10741936 | Hypothetical protein; CE0351. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.532 |
| BAC17407.1 | gene:10740996 | gene:10740999 | gene:10740996 | Conserved hypothetical protein; CE0597, similar to AX065799-1|CAC26139.1| percent identity: 71 in 224 aa. | Uncharacterized protein. | 0.997 |
| BAC17407.1 | gene:10741715 | gene:10740999 | gene:10741715 | Conserved hypothetical protein; CE0597, similar to AX065799-1|CAC26139.1| percent identity: 71 in 224 aa. | YrdC-like domain-containing protein; Belongs to the SUA5 family. | 0.661 |
| BAC17407.1 | pheT | gene:10740999 | gene:10741936 | Conserved hypothetical protein; CE0597, similar to AX065799-1|CAC26139.1| percent identity: 71 in 224 aa. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.447 |
| BAC17407.1 | tsaD | gene:10740999 | gene:10741001 | Conserved hypothetical protein; CE0597, similar to AX065799-1|CAC26139.1| percent identity: 71 in 224 aa. | Putative o-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.998 |
| BAC18437.1 | rsmA | gene:10742046 | gene:10741378 | Conserved hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | Putative dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.512 |
| BAC18437.1 | tilS | gene:10742046 | gene:10742991 | Conserved hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | Conserved hypothetical protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.403 |
| BAC18437.1 | trmB | gene:10742046 | gene:10743144 | Conserved hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.633 |
| BAC18437.1 | truB | gene:10742046 | gene:10742300 | Conserved hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.504 |
| BAC18629.1 | BAC17138.1 | gene:10742247 | gene:10740726 | Putative ATP-dependent helicase; CE1819, similar to AE004217-11|AAF94540.1| percent identity: 48 in 1299 aa. | Putative ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.408 |
| BAC18629.1 | rph | gene:10742247 | gene:10742839 | Putative ATP-dependent helicase; CE1819, similar to AE004217-11|AAF94540.1| percent identity: 48 in 1299 aa. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.523 |
| BAC18629.1 | rsmA | gene:10742247 | gene:10741378 | Putative ATP-dependent helicase; CE1819, similar to AE004217-11|AAF94540.1| percent identity: 48 in 1299 aa. | Putative dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.466 |
| BAC18842.1 | fmt | gene:10742460 | gene:10742140 | Putative ribosomal large subunit pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.445 |
| BAC18842.1 | gene:10743306 | gene:10742460 | gene:10743306 | Putative ribosomal large subunit pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Uncharacterized protein. | 0.664 |
| BAC18842.1 | pheT | gene:10742460 | gene:10741936 | Putative ribosomal large subunit pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.554 |
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