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atpB atpB atpE atpE atpF atpF atpA atpA DFH23_07357 DFH23_07357 rbfA rbfA DFH23_04828 DFH23_04828 DFH23_08463 DFH23_08463 GCA_000729995_08408 GCA_000729995_08408 DFH23_03857 DFH23_03857 DFH23_03856 DFH23_03856 DFH23_03854 DFH23_03854 DFH23_00030 DFH23_00030 atpC-2 atpC-2 atpD-2 atpD-2 DFH23_00001 DFH23_00001 atpA-2 atpA-2 atpH atpH atpF-2 atpF-2 atpE-2 atpE-2 atpB-2 atpB-2 ppk ppk GCA_000729995_07140 GCA_000729995_07140 DFH23_09262 DFH23_09262 GCA_000729995_07032 GCA_000729995_07032 GCA_000729995_07031 GCA_000729995_07031 GCA_000729995_06789 GCA_000729995_06789 DFH23_04762 DFH23_04762 DFH23_04768 DFH23_04768 AWB64_01900 AWB64_01900 DFH23_04763 DFH23_04763 GCA_000729995_06209 GCA_000729995_06209 DFH23_04761 DFH23_04761 DFH23_00402 DFH23_00402 DFH23_00401 DFH23_00401 DFH23_00400 DFH23_00400 DFH23_06382 DFH23_06382 DFH23_06383 DFH23_06383 DFH23_06385 DFH23_06385 DFH23_06413 DFH23_06413 ppa ppa DFH23_05364 DFH23_05364 DFH23_05365 DFH23_05365 nuoN nuoN DFH23_01316 DFH23_01316 DFH23_01315 DFH23_01315 nuoK nuoK DFH23_01313 DFH23_01313 nuoI nuoI nuoH nuoH DFH23_01310 DFH23_01310 DFH23_01309 DFH23_01309 DFH23_01308 DFH23_01308 nuoD nuoD nuoC nuoC nuoB nuoB nuoA nuoA DFH23_01269 DFH23_01269 DFH23_01268 DFH23_01268 GCA_000729995_04420 GCA_000729995_04420 DFH23_07061 DFH23_07061 GCA_000729995_04203 GCA_000729995_04203 GCA_000729995_04202 GCA_000729995_04202 GCA_000729995_04201 GCA_000729995_04201 GCA_000729995_04200 GCA_000729995_04200 GCA_000729995_04198 GCA_000729995_04198 GCA_000729995_03809 GCA_000729995_03809 DFH23_03543 DFH23_03543 atpD atpD atpC atpC DFH23_03852 DFH23_03852 DFH23_03848 DFH23_03848 ctaB ctaB DFH23_03838 DFH23_03838 DFH23_03837 DFH23_03837 DFH23_03836 DFH23_03836 DFH23_03835 DFH23_03835 DFH23_03823 DFH23_03823 GCA_000729995_01086 GCA_000729995_01086 GCA_000729995_01085 GCA_000729995_01085 DFH23_03920 DFH23_03920 DFH23_04091 DFH23_04091
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atpBUnannotated protein; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (232 aa)
atpEUnannotated protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (82 aa)
atpFUnannotated protein; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (244 aa)
atpAUnannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (530 aa)
DFH23_07357Unannotated protein. (324 aa)
rbfAUnannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (151 aa)
DFH23_04828Unannotated protein. (452 aa)
DFH23_08463Unannotated protein. (444 aa)
GCA_000729995_08408Unannotated protein. (446 aa)
DFH23_03857Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (547 aa)
DFH23_03856Unannotated protein; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (545 aa)
DFH23_03854Unannotated protein. (190 aa)
DFH23_00030Unannotated protein. (303 aa)
atpC-2Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. (141 aa)
atpD-2Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (464 aa)
DFH23_00001Unannotated protein. (300 aa)
atpA-2Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (513 aa)
atpHUnannotated protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (179 aa)
atpF-2Unannotated protein; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (156 aa)
atpE-2Unannotated protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (90 aa)
atpB-2Unannotated protein; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (274 aa)
ppkUnannotated protein; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (687 aa)
GCA_000729995_07140Unannotated protein. (583 aa)
DFH23_09262Unannotated protein. (548 aa)
GCA_000729995_07032Unannotated protein. (576 aa)
GCA_000729995_07031Unannotated protein. (133 aa)
GCA_000729995_06789Unannotated protein. (451 aa)
DFH23_04762Unannotated protein. (62 aa)
DFH23_04768Unannotated protein. (366 aa)
AWB64_01900Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (234 aa)
DFH23_04763Unannotated protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (500 aa)
GCA_000729995_06209Unannotated protein. (650 aa)
DFH23_04761Unannotated protein. (136 aa)
DFH23_00402Unannotated protein. (250 aa)
DFH23_00401Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (460 aa)
DFH23_00400Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (206 aa)
DFH23_06382Unannotated protein. (476 aa)
DFH23_06383Unannotated protein. (333 aa)
DFH23_06385Unannotated protein. (351 aa)
DFH23_06413Unannotated protein. (359 aa)
ppaUnannotated protein; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. (175 aa)
DFH23_05364Unannotated protein. (189 aa)
DFH23_05365Unannotated protein. (542 aa)
nuoNUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (492 aa)
DFH23_01316Unannotated protein. (496 aa)
DFH23_01315Unannotated protein. (692 aa)
nuoKUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (101 aa)
DFH23_01313Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (233 aa)
nuoIUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (162 aa)
nuoHUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (354 aa)
DFH23_01310Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (779 aa)
DFH23_01309Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (441 aa)
DFH23_01308Unannotated protein. (161 aa)
nuoDUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (417 aa)
nuoCUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (200 aa)
nuoBUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (159 aa)
nuoAUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (119 aa)
DFH23_01269Unannotated protein. (489 aa)
DFH23_01268Unannotated protein. (334 aa)
GCA_000729995_04420Unannotated protein. (499 aa)
DFH23_07061Unannotated protein. (812 aa)
GCA_000729995_04203Unannotated protein. (663 aa)
GCA_000729995_04202Unannotated protein. (269 aa)
GCA_000729995_04201Unannotated protein. (495 aa)
GCA_000729995_04200Unannotated protein. (491 aa)
GCA_000729995_04198Unannotated protein. (315 aa)
GCA_000729995_03809Unannotated protein. (406 aa)
DFH23_03543Unannotated protein. (64 aa)
atpDUnannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (506 aa)
atpCUnannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. (147 aa)
DFH23_03852Unannotated protein. (120 aa)
DFH23_03848Unannotated protein. (381 aa)
ctaBUnannotated protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (301 aa)
DFH23_03838Unannotated protein. (296 aa)
DFH23_03837Unannotated protein; Belongs to the heme-copper respiratory oxidase family. (668 aa)
DFH23_03836Unannotated protein. (202 aa)
DFH23_03835Unannotated protein. (110 aa)
DFH23_03823Unannotated protein. (85 aa)
GCA_000729995_01086Unannotated protein. (332 aa)
GCA_000729995_01085Unannotated protein. (478 aa)
DFH23_03920Unannotated protein. (110 aa)
DFH23_04091Unannotated protein. (278 aa)
Your Current Organism:
Caballeronia sordidicola
NCBI taxonomy Id: 196367
Other names: Burkholderia sordidicola, Burkholderia sp. KOPRI26592, Burkholderia sp. KOPRI26633, Burkholderia sp. PAMC 26510, Burkholderia sp. PAMC 26577, C. sordidicola, CCUG 49583, Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016, JCM 11778, KCTC 12081, Paraburkholderia sordidicola, Paraburkholderia sordidicola (Lim et al. 2003) Sawana et al. 2015, strain S5-B
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