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rplF rplF groEL-2 groEL-2 whiB3 whiB3 sigM sigM rplI rplI dnaK dnaK hspR hspR clpB clpB aceB aceB groEL-3 groEL-3 sigB sigB mcmA mcmA prpC2 prpC2 mcmB mcmB sigH sigH pyc pyc whiB4 whiB4 fadE fadE rplJ rplJ rplV rplV
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplF50S RIBOSOMAL PROTEIN L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa)
groEL-260 KDA CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) C-terminal fragment; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (426 aa)
whiB3Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (99 aa)
sigMRNA POLYMERASE SIGMA-70 FACTOR, ECF SUBFAMILY. (201 aa)
rplI50S RIBOSOMAL PROTEIN L9; Binds to the 23S rRNA. (150 aa)
dnaKHeat shock protein hsp70; Acts as a chaperone; Belongs to the heat shock protein 70 family. (618 aa)
hspRTRANSCRIPTIONAL REGULATOR MERR FAMILY. (146 aa)
clpBPROBABLE ATP-DEPENDENT PROTEASE (HEAT SHOCK PROTEIN); Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Necessary [...] (852 aa)
aceBMALATE SYNTHASE; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (739 aa)
groEL-3Chaperonin cpn60 (60Kd subunit); Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (548 aa)
sigBRNA POLYMERASE SIGMA FACTOR; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (331 aa)
mcmAMETHYLMALONYL-COA MUTASE SMALL SUBUNIT. (616 aa)
prpC2METHYLCITRATE SYNTHASE; Involved in the catabolism of short chain fatty acids (SCFA) via the tricarboxylic acid (TCA)(acetyl degradation route) and via the 2-methylcitrate cycle I (propionate degradation route). Catalyzes the Claisen condensation of propionyl-CoA and oxaloacetate (OAA) to yield 2-methylcitrate (2-MC) and CoA. Also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity. (383 aa)
mcmBMETHYLMALONYL-COA MUTASE LARGE SUBUNIT. (737 aa)
sigHPUTATIVE RNA POLYMERASE SIGMA FACTOR, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (206 aa)
pycPYRUVATE CARBOXYLASE; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1140 aa)
whiB4PUTATIVE REGULATORY PROTEIN (WHIB-RELATED PROTEIN); Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (116 aa)
fadEGLUTARYL-COA DEHYDROGENASE. (398 aa)
rplJ50S RIBOSOMAL PROTEIN L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (171 aa)
rplVRIBOSOMAL PROTEIN L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (120 aa)
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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