(15 nodes) PPM-type phosphatase-like domain superfamily network (Cellulosimicrobium sp. TH20)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARK04382.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	ARK03537.1	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (739 aa)
	ARK03814.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
	ARK03820.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
	ARK03858.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	ARK03914.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	ARK03978.1	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	ARK04074.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)
	ARK04380.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
	ARK04479.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	ARK05683.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	ARK06920.1	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	ARK05922.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	ARK06341.1	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	ARK06489.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)

Your Current Organism:

Cellulosimicrobium sp. TH20

NCBI taxonomy Id: 1980001
Other names: C. sp. TH-20, Cellulosimicrobium sp. TH-20

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARK03537.1	ARK03814.1	B8281_01120	B8281_02745	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
ARK03537.1	ARK03820.1	B8281_01120	B8281_02795	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
ARK03537.1	ARK03858.1	B8281_01120	B8281_03035	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
ARK03537.1	ARK03914.1	B8281_01120	B8281_03350	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
ARK03537.1	ARK04074.1	B8281_01120	B8281_04325	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
ARK03537.1	ARK04380.1	B8281_01120	B8281_06130	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ARK03537.1	ARK04382.1	B8281_01120	B8281_06140	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
ARK03537.1	ARK04479.1	B8281_01120	B8281_06765	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
ARK03537.1	ARK05683.1	B8281_01120	B8281_14015	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ARK03537.1	ARK06489.1	B8281_01120	B8281_18910	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
ARK03537.1	ARK06920.1	B8281_01120	B8281_14590	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
ARK03814.1	ARK03537.1	B8281_02745	B8281_01120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
ARK03814.1	ARK03820.1	B8281_02745	B8281_02795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
ARK03814.1	ARK03858.1	B8281_02745	B8281_03035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
ARK03814.1	ARK04074.1	B8281_02745	B8281_04325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
ARK03814.1	ARK04380.1	B8281_02745	B8281_06130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
ARK03814.1	ARK04382.1	B8281_02745	B8281_06140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
ARK03814.1	ARK05683.1	B8281_02745	B8281_14015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
ARK03814.1	ARK06489.1	B8281_02745	B8281_18910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
ARK03820.1	ARK03537.1	B8281_02795	B8281_01120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844