Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADM96804.1 | ADM96955.1 | Dda3937_03551 | Dda3937_01181 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | 0.499 |
| ADM96804.1 | cel5Z | Dda3937_03551 | Dda3937_02793 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Endo-1,4-beta-glucanase precursor; Represents 97% of the global cellulase activity. | 0.655 |
| ADM96804.1 | pelB | Dda3937_03551 | Dda3937_04193 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Pectate lyase B; PelB is secreted by the Out secretion system; Protein involved in pectate lyase activity, polysaccharide catabolic process, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host and pathogenesis. | 0.772 |
| ADM96804.1 | pelC | Dda3937_03551 | Dda3937_04192 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Pectate lyase C; PelC is secretd by the Out secretion system; Protein involved in polysaccharide catabolic process, carbohydrate catabolic process and pathogenesis. | 0.772 |
| ADM96804.1 | pelL | Dda3937_03551 | Dda3937_02794 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Pectate lyase pelL; Presents an endo-cleaving activity on polygalacturonate or partially methylated pectin. Is effective in the maceration of plant tissue, and has an important role in soft-rot disease. Is 280-fold less active against polygalacturonate than the major pectate lyase PelB. When assayed on polygalacturonate, PelL releases oligogalacturonates of different sizes; upon prolonged incubation, PelL degrades the primary products to unsaturated tetramer and pentamer in addition to unsaturated dimer and trimer. When assayed on oligogalacturonates (degrees of polymerization of 2 to [...] | 0.738 |
| ADM96804.1 | pelZ | Dda3937_03551 | Dda3937_04191 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Pectate lyase; PelZ is secreted by the Out secretion system; Protein involved in pectate lyase activity, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host, pectin catabolic process and pathogenesis. | 0.521 |
| ADM96804.1 | pemA | Dda3937_03551 | Dda3937_03374 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Pectinesterase; Involved in maceration and soft-rotting of plant tissue. | 0.739 |
| ADM96804.1 | pemB | Dda3937_03551 | Dda3937_03435 | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | Possible pectinesterase; Probably involved in the degradation of methylated oligogalacturonides present in the periplasm. | 0.516 |
| ADM96955.1 | ADM96804.1 | Dda3937_01181 | Dda3937_03551 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase; Homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper; Protein involved in polysaccharide catabolic process, protein secretion by the type II secretion system, interaction with host via protein secreted by type II secretion system and metabolism by symbiont of host cell wall pectin. | 0.499 |
| ADM96955.1 | cel5Z | Dda3937_01181 | Dda3937_02793 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Endo-1,4-beta-glucanase precursor; Represents 97% of the global cellulase activity. | 0.662 |
| ADM96955.1 | kduI | Dda3937_01181 | Dda3937_03727 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.623 |
| ADM96955.1 | pelA | Dda3937_01181 | Dda3937_03370 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase, Pla; Involved in maceration and soft-rotting of plant tissue. | 0.496 |
| ADM96955.1 | pelB | Dda3937_01181 | Dda3937_04193 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase B; PelB is secreted by the Out secretion system; Protein involved in pectate lyase activity, polysaccharide catabolic process, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host and pathogenesis. | 0.601 |
| ADM96955.1 | pelC | Dda3937_01181 | Dda3937_04192 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase C; PelC is secretd by the Out secretion system; Protein involved in polysaccharide catabolic process, carbohydrate catabolic process and pathogenesis. | 0.608 |
| ADM96955.1 | pelD | Dda3937_01181 | Dda3937_03372 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase D; PelE is secreted by the Out secretion system; Protein involved in pectate lyase activity, polysaccharide catabolic process, carbohydrate catabolic process, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host and pathogenesis. | 0.517 |
| ADM96955.1 | pelE | Dda3937_01181 | Dda3937_03371 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase pelE; Involved in maceration and soft-rotting of plant tissue. Pectate lyases have been implicated as pathogenicity factors which induce maceration or rotting of plant tissue. PelE is sufficient to induce these effects under laboratory conditions. | 0.520 |
| ADM96955.1 | pelL | Dda3937_01181 | Dda3937_02794 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase pelL; Presents an endo-cleaving activity on polygalacturonate or partially methylated pectin. Is effective in the maceration of plant tissue, and has an important role in soft-rot disease. Is 280-fold less active against polygalacturonate than the major pectate lyase PelB. When assayed on polygalacturonate, PelL releases oligogalacturonates of different sizes; upon prolonged incubation, PelL degrades the primary products to unsaturated tetramer and pentamer in addition to unsaturated dimer and trimer. When assayed on oligogalacturonates (degrees of polymerization of 2 to [...] | 0.718 |
| ADM96955.1 | pelZ | Dda3937_01181 | Dda3937_04191 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectate lyase; PelZ is secreted by the Out secretion system; Protein involved in pectate lyase activity, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host, pectin catabolic process and pathogenesis. | 0.665 |
| ADM96955.1 | pemA | Dda3937_01181 | Dda3937_03374 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Pectinesterase; Involved in maceration and soft-rotting of plant tissue. | 0.780 |
| ADM96955.1 | pemB | Dda3937_01181 | Dda3937_03435 | Xylosidase/arabinosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family. | Possible pectinesterase; Probably involved in the degradation of methylated oligogalacturonides present in the periplasm. | 0.661 |
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