STRINGSTRING
ogl ogl kdgN kdgN lacZ lacZ pecS pecS efp efp ganL ganL ompA ompA pelW pelW ompF ompF kdgR kdgR ompW ompW yeiP yeiP pehX pehX ompR ompR crp crp
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oglOligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants. (388 aa)
kdgNOligogalacturonate specific porin; Protein involved in channel activity, voltage-gated ion channel activity, metabolism by symbiont of host cell wall pectin, interaction with host via protein secreted by type II secretion system and pectin metabolic process. (243 aa)
lacZBeta-galactosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, beta-galactosidase activity, catalytic activity, cation binding, carbohydrate catabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 2 family. (1037 aa)
pecSDNA-binding transcriptional regulatory protein PecS; Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM. (166 aa)
efpElongation factor EF-P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. (188 aa)
ganLGalactan outer membrane porin; Involved in the transport of maltose and maltodextrins. Belongs to the porin LamB (TC 1.B.3) family. (423 aa)
ompAOuter membrane protein A (3a;II*;G;d); Protein involved in structural molecule activity; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (353 aa)
pelWExopolygalacturonate lyase; Catalyzes the formation of unsaturated digalacturonates from polygalacturonate or short oligogalacturonates. Belongs to the polysaccharide lyase 2 family. (543 aa)
ompFOuter membrane porin 1a (Ia;b;F); Protein involved in transporter activity and transport. (367 aa)
kdgRDNA-binding transcriptional regulatory protein KdgR; KdgR interacts with 2-keto-3-deoxygluconate which is an inducer; The consensus KdgR-binding site is ATRAAAYRNYRTTTYAT; KdgR belongs to the IclR family of transcriptional regulator; Protein involved in DNA binding, transcription repressor activity, metabolism by symbiont of host cell wall pectin, regulation of transcription, DNA-dependent, negative regulation of transcription and pathogenesis. (263 aa)
ompWOuter membrane protein W. (210 aa)
yeiPPredicted translation elongation factor; Protein involved in (DEPRECATED) molecular function unknown, translation elongation factor activity, (DEPRECATED) biological process unknown and translational elongation. (190 aa)
pehXExo-poly-alpha-D-galacturonosidase precursor; Protein involved in polygalacturonase activity, pectate lyase activity, polysaccharide catabolic process, carbohydrate catabolic process, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host, carbohydrate metabolic process, pectin catabolic process and metabolism by symbiont of host cell wall pectin; Belongs to the glycosyl hydrolase 28 family. (602 aa)
ompRDNA-binding response regulator in two-component regulatory system with EnvZ; OmpR is phosphorylated by the sensor-histidine kinase EnvZ in response to variations of the osmolarity of the growth medium; Protein involved in transcription activator activity, transcription repressor activity, two-component response regulator activity, transcription, positive regulation of transcription and negative regulation of transcription. (239 aa)
crpCyclic AMP receptor protein; Protein involved in transcription activator activity, transcription repressor activity, transcription factor activity, DNA binding, transcription, regulation of transcription, DNA-dependent and regulation of transcription. (210 aa)
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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