STRINGSTRING
crp crp ihfB ihfB luxS luxS rffH rffH rfbC rfbC yiaY yiaY ihfA ihfA galF galF tonB-2 tonB-2 tdcB tdcB ADN00003.1 ADN00003.1 iscR iscR ptsG ptsG icd icd bcsA bcsA gltA gltA sdhB sdhB fumA fumA exbD exbD exbB exbB ADM96963.1 ADM96963.1 tonB tonB rpoB rpoB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
crpCyclic AMP receptor protein; Protein involved in transcription activator activity, transcription repressor activity, transcription factor activity, DNA binding, transcription, regulation of transcription, DNA-dependent and regulation of transcription. (210 aa)
ihfBIntegration host factor (IHF), DNA-binding protein, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (94 aa)
luxSS-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (171 aa)
rffHGlucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (289 aa)
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (178 aa)
yiaYAlcohol dehydrogenase; Protein involved in oxidoreductase activity, metal ion binding and metabolic process. (382 aa)
ihfAIntegration host factor (IHF), DNA-binding protein, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (99 aa)
galFPredicted regulatory subunit of UTP--glucose-1-phosphate uridylyltransferase, with GalU; Protein involved in nucleotidyltransferase activity, nucleotide-sugar biosynthetic process and biosynthetic process. (298 aa)
tonB-2Ferric siderophore transport system, periplasmic binding protein TonB; Protein involved in iron ion transmembrane transporter activity, protein transporter activity, iron ion transport and protein transport. (333 aa)
tdcBCatabolic threonine dehydratase, PLP-dependent; Protein involved in catalytic activity, amino acid catabolic process, metabolic process and amino acid metabolic process. (322 aa)
ADN00003.1Alcohol dehydrogenase; Protein involved in oxidoreductase activity, metal ion binding and metabolic process. (398 aa)
iscRFe-S cluster-containing transcription factor; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. (164 aa)
ptsGPTS system glucose-specific IICB component; Protein involved in glucose transmembrane transporter activity, sugar:hydrogen symporter activity, carbohydrate catabolic process, protein modification process, glucose transport, transport and phosphoenolpyruvate-dependent sugar phosphotransferase system. (477 aa)
icdIsocitrate dehydrogenase (NADP+); Protein involved in oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, tricarboxylic acid cycle, anaerobic respiration and metabolic process. (417 aa)
bcsACellulose synthase (UDP-forming); Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose. (696 aa)
gltACitrate synthase; Protein involved in transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, tricarboxylic acid cycle, aerobic respiration and anaerobic respiration; Belongs to the citrate synthase family. (428 aa)
sdhBSuccinate dehydrogenase, FeS subunit; Protein involved in (DEPRECATED) electron donor activity, electron carrier activity, iron-sulfur cluster binding, oxidoreductase activity, tricarboxylic acid cycle, aerobic respiration and (OBSOLETE) electron transport; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (238 aa)
fumAFumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (547 aa)
exbDMembrane spanning protein in TonB-ExbB-ExbD complex; Protein involved in transporter activity, iron ion transport and transport. (139 aa)
exbBMembrane spanning protein in TonB-ExbB-ExbD complex; Protein involved in protein transporter activity, iron ion transport and transport. (312 aa)
ADM96963.1Alcohol dehydrogenase; Protein involved in oxidoreductase activity, metal ion binding, amine catabolic process and metabolic process. (385 aa)
tonBTonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (252 aa)
rpoBRNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1342 aa)
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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