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yafD yafD yafA yafA crl crl ybfA ybfA ybgE ybgE c1173 c1173 yciN yciN yfcZ yfcZ yhiO yhiO uspA uspA yihD yihD c5314 c5314 ytfK ytfK smp smp
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yafDHypothetical protein yafD; Escherichia coli K-12 ortholog: b0209; Escherichia coli O157:H7 ortholog: z0232. (274 aa)
yafAHypothetical protein yafA; Displays esterase activity toward pNP-butyrate. (414 aa)
crlCurlin genes transcriptional activatory protein; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. (133 aa)
ybfAHypothetical protein ybfA precursor; Escherichia coli K-12 ortholog: b0699; Escherichia coli O157:H7 ortholog: z0846. (68 aa)
ybgEProtein ybgE; Escherichia coli K-12 ortholog: b0735; Escherichia coli O157:H7 ortholog: z0903. (97 aa)
c1173Hypothetical protein; Residues 19 to 68 of 68 are 83.99 pct identical to residues 204 to 253 of 287 from GenPept.129 : >gb|AAL22135.1| (AE008850) putative methyltransferase [Salmonella typhimurium LT2]. (68 aa)
yciNProtein yciN; Escherichia coli K-12 ortholog: b1273; Escherichia coli O157:H7 ortholog: z2537. (83 aa)
yfcZHypothetical protein yfcZ; Escherichia coli K-12 ortholog: b2343; Escherichia coli O157:H7 ortholog: z3606; Belongs to the UPF0381 family. (102 aa)
yhiOUniversal stress protein B; Escherichia coli K-12 ortholog: b3494; Escherichia coli O157:H7 ortholog: z4894. (111 aa)
uspAUniversal stress protein A; Required for resistance to DNA-damaging agents. (144 aa)
yihDProtein yihD; Escherichia coli K-12 ortholog: b3858; Escherichia coli O157:H7 ortholog: z5390; To H.influenzae HI_0845. (99 aa)
c5314Protein ytfJ precursor; Escherichia coli K-12 ortholog: b4216; Escherichia coli O157:H7 ortholog: z5827. (185 aa)
ytfKHypothetical protein ytfK; Escherichia coli K-12 ortholog: b4217; Escherichia coli O157:H7 ortholog: z5828. (90 aa)
smpProtein smp precursor; Escherichia coli K-12 ortholog: b4387. (214 aa)
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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