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ybiK ybiK yliA yliA gsiB gsiB yliC yliC yliD yliD oppA oppA oppB oppB oppC oppC oppD oppD oppF oppF sapF sapF sapD sapD sapC sapC sapB sapB sapA sapA mppA mppA c3761 c3761 nikA nikA nikB nikB nikC nikC nikD nikD nikE nikE yhhG yhhG dppF dppF dppD dppD dppC dppC dppB dppB dppA dppA yddO yddO c5078 c5078 yddQ yddQ yddR yddR c5081 c5081
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ybiKPutative L-asparaginase precursor; Escherichia coli K-12 ortholog: b0828; Escherichia coli O157:H7 ortholog: z1052. (321 aa)
yliAHypothetical ABC transporter ATP-binding protein yliA; Part of the ABC transporter complex GsiABCD involved in glutathione import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Glutathione importer (TC 3.A.1.5.11) family. (629 aa)
gsiBPutative binding protein yliB precursor; Part of the ABC transporter complex GsiABCD involved in glutathione import. Binds glutathione. (564 aa)
yliCHypothetical ABC transporter permease protein yliC; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane. (306 aa)
yliDHypothetical ABC transporter permease protein yliD; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane. (303 aa)
oppAPeriplasmic oligopeptide-binding protein precursor; Escherichia coli K-12 ortholog: b1243; Escherichia coli O157:H7 ortholog: z2019. (567 aa)
oppBOligopeptide transport system permease protein oppB; Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily. (306 aa)
oppCOligopeptide transport system permease protein oppC; Escherichia coli K-12 ortholog: b1245; Escherichia coli O157:H7 ortholog: z2021. (302 aa)
oppDOligopeptide transport ATP-binding protein oppD; Escherichia coli K-12 ortholog: b1246; Escherichia coli O157:H7 ortholog: z2022; Belongs to the ABC transporter superfamily. (337 aa)
oppFOligopeptide transport ATP-binding protein oppF; Escherichia coli K-12 ortholog: b1247; Escherichia coli O157:H7 ortholog: z2023; Belongs to the ABC transporter superfamily. (334 aa)
sapFPeptide transport system ATP-binding protein sapF; Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides; Belongs to the ABC transporter superfamily. (268 aa)
sapDPeptide transport system ATP-binding protein sapD; Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides; Belongs to the ABC transporter superfamily. (330 aa)
sapCPeptide transport system permease protein sapC; Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily. (296 aa)
sapBPeptide transport system permease protein sapB; Escherichia coli K-12 ortholog: b1293; Escherichia coli O157:H7 ortholog: z2496. (321 aa)
sapAPeptide transport periplasmic protein sapA precursor; Escherichia coli K-12 ortholog: b1294; Escherichia coli O157:H7 ortholog: z2494. (547 aa)
mppAPeriplasmic murein peptide-binding protein precursor; Escherichia coli K-12 ortholog: b1329; Escherichia coli O157:H7 ortholog: z2438. (544 aa)
c3761Putative binding protein ygiS precursor; Escherichia coli K-12 ortholog: b3020; Escherichia coli O157:H7 ortholog: z4374. (556 aa)
nikANickel-binding periplasmic protein precursor; Escherichia coli K-12 ortholog: b3476; Escherichia coli O157:H7 ortholog: z4868. (524 aa)
nikBNickel transport system permease protein nikB; Escherichia coli K-12 ortholog: b3477; Escherichia coli O157:H7 ortholog: z4869. (314 aa)
nikCNickel transport system permease protein nikC; Escherichia coli K-12 ortholog: b3478; Escherichia coli O157:H7 ortholog: z4870. (277 aa)
nikDNickel transport ATP-binding protein nikD; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. (254 aa)
nikENickel transport ATP-binding protein nikE; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. (268 aa)
yhhGNickel responsive regulator; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel (By similarity). (133 aa)
dppFDipeptide transport ATP-binding protein dppF; Escherichia coli K-12 ortholog: b3540; Escherichia coli O157:H7 ortholog: z4957; Belongs to the ABC transporter superfamily. (334 aa)
dppDDipeptide transport ATP-binding protein dppD; Escherichia coli K-12 ortholog: b3541; Escherichia coli O157:H7 ortholog: z4958; Belongs to the ABC transporter superfamily. (327 aa)
dppCDipeptide transport system permease protein dppC; Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily. (300 aa)
dppBDipeptide transport system permease protein dppB; Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily. (339 aa)
dppAPeriplasmic dipeptide transport protein precursor; Dipeptide-binding protein; Escherichia coli K-12 ortholog: b3544; Escherichia coli O157:H7 ortholog: z4961. (535 aa)
yddOHypothetical ABC transporter ATP-binding protein yddO; Escherichia coli K-12 ortholog: b1483; Escherichia coli O157:H7 ortholog: z2227. (234 aa)
c5078Putative oligopeptide ABC transporter; Residues 21 to 287 of 298 are 62.98 pct identical to residues 1 to 281 of 292 from GenPept.129 : >emb|CAC92681.1| (AJ414157) putative ABC transporter transporter, ATP-binding protein [Yersinia pestis]. (298 aa)
yddQHypothetical ABC transporter permease protein yddQ; Escherichia coli K-12 ortholog: b1485; Escherichia coli O157:H7 ortholog: z2225. (277 aa)
yddRHypothetical ABC transporter permease protein yddR; Escherichia coli K-12 ortholog: b1486; Escherichia coli O157:H7 ortholog: z2224. (380 aa)
c5081Putative conserved protein; Residues 9 to 506 of 522 are 28.96 pct identical to residues 14 to 499 of 516 from MG1655 : b1487. (522 aa)
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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