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yddO yddO c5078 c5078 yddQ yddQ yddR yddR c5081 c5081
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yddOHypothetical ABC transporter ATP-binding protein yddO; Escherichia coli K-12 ortholog: b1483; Escherichia coli O157:H7 ortholog: z2227. (234 aa)
c5078Putative oligopeptide ABC transporter; Residues 21 to 287 of 298 are 62.98 pct identical to residues 1 to 281 of 292 from GenPept.129 : >emb|CAC92681.1| (AJ414157) putative ABC transporter transporter, ATP-binding protein [Yersinia pestis]. (298 aa)
yddQHypothetical ABC transporter permease protein yddQ; Escherichia coli K-12 ortholog: b1485; Escherichia coli O157:H7 ortholog: z2225. (277 aa)
yddRHypothetical ABC transporter permease protein yddR; Escherichia coli K-12 ortholog: b1486; Escherichia coli O157:H7 ortholog: z2224. (380 aa)
c5081Putative conserved protein; Residues 9 to 506 of 522 are 28.96 pct identical to residues 14 to 499 of 516 from MG1655 : b1487. (522 aa)
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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