STRINGSTRING
hofG hofG hofB hofB ybaV ybaV nfrB nfrB c2405 c2405 yghD yghD c3702 c3702 yheE yheE yheF yheF yheG yheG hofH hofH yheH yheH yheI yheI yheJ yheJ pshM pshM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hofGPutative general secretion pathway protein G precursor; Protein transport protein hofG; Escherichia coli K-12 ortholog: b3328. (145 aa)
hofBProtein transport protein hofB; Escherichia coli K-12 ortholog: b0107; Escherichia coli O157:H7 ortholog: z0117. (461 aa)
ybaVHypothetical protein ybaV precursor; Escherichia coli K-12 ortholog: b0442; Escherichia coli O157:H7 ortholog: z0549. (123 aa)
nfrBBacteriophage N4 adsorption protein B; Escherichia coli K-12 ortholog: b0569; Escherichia coli O157:H7 ortholog: z0699. (720 aa)
c2405Hypothetical protein. (393 aa)
yghDPutative general secretion pathway protein M-type yghD; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (178 aa)
c3702Hypothetical protein; Residues 1 to 137 of 137 are 98.54 pct identical to residues 189 to 325 of 325 from GenPept.129 : >gb|AAL60191.1|AF426313_11 (AF426313) hypothetical type II secretion protein GspK [Escherichia coli]. (137 aa)
yheEProbable general secretion pathway protein C; Escherichia coli K-12 ortholog: b3324. (271 aa)
yheFProbable general secretion pathway protein D precursor; Escherichia coli K-12 ortholog: b3325. (654 aa)
yheGProbable general secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (493 aa)
hofHPutative general secretion pathway protein H precursor; Protein transport protein hofH; Escherichia coli K-12 ortholog: b3329. (169 aa)
yheHProbable general secretion pathway protein I precursor; Escherichia coli K-12 ortholog: b3330; Escherichia coli O157:H7 ortholog: z5741. (138 aa)
yheIProbable general secretion pathway protein J precursor; Escherichia coli K-12 ortholog: b3331. (195 aa)
yheJProbable general secretion pathway protein K; Escherichia coli K-12 ortholog: b3332. (301 aa)
pshMPutative general secretion pathway protein M; Transport protein pshM; Escherichia coli K-12 ortholog: b3334. (161 aa)
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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