STRINGSTRING
nfo nfo gip gip ycjR ycjR ygbM ygbM xylA xylA c4398 c4398 sgbU sgbU yihM yihM rhaA rhaA sgaU sgaU c5302 c5302 uxuA uxuA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nfoEndonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. (285 aa)
gipHydroxypyruvate isomerase; Escherichia coli K-12 ortholog: b0508; Escherichia coli O157:H7 ortholog: z0662; Belongs to the hyi family. (258 aa)
ycjRHypothetical protein ycjR; Escherichia coli K-12 ortholog: b1314; Escherichia coli O157:H7 ortholog: z2469. (265 aa)
ygbMHypothetical protein ygbM; Escherichia coli K-12 ortholog: b2739; Escherichia coli O157:H7 ortholog: z0662; Belongs to the hyi family. (258 aa)
xylAXylose isomerase; Escherichia coli K-12 ortholog: b3565; Escherichia coli O157:H7 ortholog: z4990; Belongs to the xylose isomerase family. (444 aa)
c4398Hypothetical protein; Residues 4 to 305 of 306 are 76.72 pct identical to residues 3 to 307 of 310 from GenPept.129 : >gb|AAL22529.1| (AE008870) putative chemotaxis protein, resembles cheA [Salmonella typhimurium LT2]. (306 aa)
sgbUPutative hexulose-6-phosphate isomerase; Escherichia coli K-12 ortholog: b3582; Escherichia coli O157:H7 ortholog: z5806. (297 aa)
yihMHypothetical protein yihM; Escherichia coli K-12 ortholog: b3873; Escherichia coli O157:H7 ortholog: z5409. (326 aa)
rhaAL-rhamnose isomerase; Escherichia coli K-12 ortholog: b3903; Escherichia coli O157:H7 ortholog: z5447. (421 aa)
sgaUPutative hexulose-6-phosphate isomerase; Catalyzes the isomerization of L-xylulose-5-phosphate to L- ribulose-5-phosphate. Is involved in the anaerobic L-ascorbate utilization; Belongs to the L-ribulose-5-phosphate 3-epimerase family. (284 aa)
c5302Hypothetical protein; Residues 1 to 268 of 280 are 97.76 pct identical to residues 1 to 268 of 294 from GenPept.129 : >gb|AAL50626.1|AF417476_3 (AF417476) unknown [Shigella flexneri]. (280 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. (394 aa)
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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