14 items (Escherichia coli CFT073) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kpsM	KpsM protein; Residues 1 to 258 of 258 are 96.89 pct identical to residues 1 to 258 of 258 from SwissProt.40 : >sp\|P24584\|KPM2_ECOLI POLYSIALIC ACID TRANSPORT PROTEIN KPSM. (258 aa)
	feoB	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. (777 aa)
	chuA	Outer membrane heme/hemoglobin receptor; Escherichia coli O157:H7 ortholog: z4911. (648 aa)
	yjaA	Hypothetical protein yjaA; Escherichia coli K-12 ortholog: b4011. (139 aa)
	speF	Ornithine decarboxylase, inducible; Escherichia coli K-12 ortholog: b0693; Escherichia coli O157:H7 ortholog: z0839. (735 aa)
	ybbW	Putative allantoin permease; Allantoin transport protein; Escherichia coli K-12 ortholog: b0511; Escherichia coli O157:H7 ortholog: z0665. (484 aa)
	fliC	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (595 aa)
	speC	Ornithine decarboxylase, constitutive; Escherichia coli K-12 ortholog: b2965; Escherichia coli O157:H7 ortholog: z4310. (711 aa)
	hlyA	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL. (1024 aa)
	papC	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600. (840 aa)
	iutA	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR). (759 aa)
	iucD	IucD protein; Residues 1 to 425 of 445 are 97.88 pct identical to residues 1 to 425 of 425 from SwissProt.40 : >sp\|P11295\|IUCD_ECOLI L-LYSINE 6-MONOOXYGENASE (LYSINE N6-HYDROXYLASE). (445 aa)
	sfaD	Putative minor F1C fimbrial subunit precursor; Escherichia coli K-12 ortholog: b4315; Escherichia coli O157:H7 ortholog: z5913. (174 aa)
	focC	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family. (231 aa)

Your Current Organism:

Escherichia coli CFT073

NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chuA	yjaA	c4308	c4968	Outer membrane heme/hemoglobin receptor; Escherichia coli O157:H7 ortholog: z4911.	Hypothetical protein yjaA; Escherichia coli K-12 ortholog: b4011.	0.564
feoB	focC	c4186	c1241	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system.	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.	0.516
fliC	hlyA	c2338	c3570	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	0.538
focC	feoB	c1241	c4186	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system.	0.516
focC	hlyA	c1241	c3570	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	0.442
focC	papC	c1241	c3590	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.	0.896
focC	sfaD	c1241	c1240	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.	Putative minor F1C fimbrial subunit precursor; Escherichia coli K-12 ortholog: b4315; Escherichia coli O157:H7 ortholog: z5913.	0.989
hlyA	fliC	c3570	c2338	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.538
hlyA	focC	c3570	c1241	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.	0.442
hlyA	iutA	c3570	c3623	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).	0.813
hlyA	papC	c3570	c3590	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.	0.443
iucD	iutA	c3624	c3623	IucD protein; Residues 1 to 425 of 445 are 97.88 pct identical to residues 1 to 425 of 425 from SwissProt.40 : >sp\|P11295\|IUCD_ECOLI L-LYSINE 6-MONOOXYGENASE (LYSINE N6-HYDROXYLASE).	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).	0.862
iutA	hlyA	c3623	c3570	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	0.813
iutA	iucD	c3623	c3624	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).	IucD protein; Residues 1 to 425 of 445 are 97.88 pct identical to residues 1 to 425 of 425 from SwissProt.40 : >sp\|P11295\|IUCD_ECOLI L-LYSINE 6-MONOOXYGENASE (LYSINE N6-HYDROXYLASE).	0.862
iutA	papC	c3623	c3590	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.	0.463
iutA	sfaD	c3623	c1240	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).	Putative minor F1C fimbrial subunit precursor; Escherichia coli K-12 ortholog: b4315; Escherichia coli O157:H7 ortholog: z5913.	0.470
papC	focC	c3590	c1241	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.	F1C periplasmic chaperone; Involved in the biogenesis of the F1C fimbriae. Belongs to the periplasmic pilus chaperone family.	0.896
papC	hlyA	c3590	c3570	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.	Hemolysin A; Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp\|P09983\|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL.	0.443
papC	iutA	c3590	c3623	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.	IutA protein; Residues 28 to 759 of 759 are 87.56 pct identical to residues 2 to 732 of 732 from SwissProt.40 : >sp\|P14542\|IUTA_ECOLI FERRIC AEROBACTIN RECEPTOR PRECURSOR (CLOACIN RECEPTOR).	0.463
papC	sfaD	c3590	c1240	PapC protein; Residues 5 to 836 of 840 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.	Putative minor F1C fimbrial subunit precursor; Escherichia coli K-12 ortholog: b4315; Escherichia coli O157:H7 ortholog: z5913.	0.685