STRINGSTRING
kduD_1 kduD_1 kduI kduI uxaC_1 uxaC_1 rhgT rhgT pgl_1 pgl_1 ARK29534.1 ARK29534.1 yesS yesS pemA pemA lipO lipO yteP yteP araQ_1 araQ_1 ARK29540.1 ARK29540.1 ARK29541.1 ARK29541.1 ARK29542.1 ARK29542.1 pgl_2 pgl_2 ARK29544.1 ARK29544.1 xynB_1 xynB_1 yteR yteR yteS yteS ARK29548.1 ARK29548.1 yteT yteT kdgK kdgK uxaA uxaA uxaB uxaB kdgA kdgA uidA uidA pelX pelX uxaC_2 uxaC_2 xynB_2 xynB_2 xynA xynA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
kduD_1DNA-binding transcriptional regulator; Frameshift. (252 aa)
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)
uxaC_1Uronate isomerase. (467 aa)
rhgTRhamnogalacturonan acetylesterase RhgT. (226 aa)
pgl_1Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (516 aa)
ARK29534.1Xylose isomerase-like TIM barrel. (281 aa)
yesSHTH-type transcriptional regulator YesS. (765 aa)
pemAPectinesterase A precursor. (313 aa)
lipOLipoprotein LipO precursor. (517 aa)
ytePPutative multiple-sugar transport system permease YteP. (320 aa)
araQ_1L-arabinose transport system permease protein AraQ. (291 aa)
ARK29540.1Hypothetical protein. (367 aa)
ARK29541.1Major Facilitator Superfamily protein. (400 aa)
ARK29542.1Cupin domain protein. (106 aa)
pgl_2Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (509 aa)
ARK29544.1Abhydrolase family protein. (339 aa)
xynB_1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (518 aa)
yteRUnsaturated rhamnogalacturonyl hydrolase YteR. (369 aa)
yteSPutative lipoprotein YteS precursor. (177 aa)
ARK29548.1Hypothetical protein. (219 aa)
yteTPutative oxidoreductase YteT precursor. (429 aa)
kdgK2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family. (317 aa)
uxaAAltronate dehydratase. (498 aa)
uxaBAltronate oxidoreductase. (507 aa)
kdgAKHG/KDPG aldolase. (211 aa)
uidABeta-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (601 aa)
pelXPectate disaccharide-lyase precursor. (1604 aa)
uxaC_2Uronate isomerase. (464 aa)
xynB_2Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (535 aa)
xynAEndo-1,4-beta-xylanase A precursor. (145 aa)
Your Current Organism:
Bacillus krulwichiae
NCBI taxonomy Id: 199441
Other names: B. krulwichiae, Bacillus krulwichiae Yumoto et al. 2003, Bacillus krulwichii, IAM 15000, JCM 11691, NBRC 102362, NCIMB 13904, strain AM31D
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