STRINGSTRING
nikB nikB oppD_2 oppD_2 oppF_2 oppF_2 dppC_2 dppC_2 gsiC_6 gsiC_6 appA_2 appA_2 oppF_6 oppF_6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nikBNickel-binding periplasmic protein precursor; Frameshift. (314 aa)
oppD_2Nickel transport system permease protein NikC; Frameshift. (276 aa)
oppF_2Oligopeptide transport ATP-binding protein OppF. (269 aa)
dppC_2Dipeptide transport system permease protein DppC. (304 aa)
gsiC_6Glutathione transport system permease protein GsiC. (315 aa)
appA_2Oligopeptide-binding protein AppA precursor. (544 aa)
oppF_6Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (336 aa)
Your Current Organism:
Bacillus krulwichiae
NCBI taxonomy Id: 199441
Other names: B. krulwichiae, Bacillus krulwichiae Yumoto et al. 2003, Bacillus krulwichii, IAM 15000, JCM 11691, NBRC 102362, NCIMB 13904, strain AM31D
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