(12 nodes) Oligopeptide/dipeptide ABC transporter, C-terminal, and Nickel cation transmembrane transporter activity network (Bacillus krulwichiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	oppF_1	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (336 aa)
	oppD_1	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (342 aa)
	gsiC_1	Glutathione transport system permease protein GsiC. (313 aa)
	gsiD_1	Glutathione transport system permease protein GsiD. (298 aa)
	gsiB_1	Glutathione-binding protein GsiB precursor. (537 aa)
	gsiC_4	Glutathione-binding protein GsiB precursor; Frameshift. (311 aa)
	nikC_2	Nickel transport system permease protein NikC. (272 aa)
	gsiA	Glutathione import ATP-binding protein GsiA. (505 aa)
	oppF_7	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (332 aa)
	oppD_6	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (330 aa)
	gsiC_7	Glutathione transport system permease protein GsiD; Frameshift. (317 aa)
	gsiB_6	Glutathione-binding protein GsiB precursor. (536 aa)

Your Current Organism:

Bacillus krulwichiae

NCBI taxonomy Id: 199441
Other names: B. krulwichiae, Bacillus krulwichiae Yumoto et al. 2003, Bacillus krulwichii, IAM 15000, JCM 11691, NBRC 102362, NCIMB 13904, strain AM31D

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gsiA	gsiB_1	BkAM31D_09125	BkAM31D_00115	Glutathione import ATP-binding protein GsiA.	Glutathione-binding protein GsiB precursor.	0.405
gsiA	gsiB_6	BkAM31D_09125	BkAM31D_23855	Glutathione import ATP-binding protein GsiA.	Glutathione-binding protein GsiB precursor.	0.432
gsiA	gsiC_1	BkAM31D_09125	BkAM31D_00105	Glutathione import ATP-binding protein GsiA.	Glutathione transport system permease protein GsiC.	0.829
gsiA	gsiC_4	BkAM31D_09125	BkAM31D_09115	Glutathione import ATP-binding protein GsiA.	Glutathione-binding protein GsiB precursor; Frameshift.	0.956
gsiA	gsiC_7	BkAM31D_09125	BkAM31D_23850	Glutathione import ATP-binding protein GsiA.	Glutathione transport system permease protein GsiD; Frameshift.	0.848
gsiA	gsiD_1	BkAM31D_09125	BkAM31D_00110	Glutathione import ATP-binding protein GsiA.	Glutathione transport system permease protein GsiD.	0.901
gsiA	nikC_2	BkAM31D_09125	BkAM31D_09120	Glutathione import ATP-binding protein GsiA.	Nickel transport system permease protein NikC.	0.961
gsiA	oppD_1	BkAM31D_09125	BkAM31D_00100	Glutathione import ATP-binding protein GsiA.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.641
gsiA	oppD_6	BkAM31D_09125	BkAM31D_23835	Glutathione import ATP-binding protein GsiA.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.641
gsiA	oppF_7	BkAM31D_09125	BkAM31D_23830	Glutathione import ATP-binding protein GsiA.	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.634
gsiB_1	gsiA	BkAM31D_00115	BkAM31D_09125	Glutathione-binding protein GsiB precursor.	Glutathione import ATP-binding protein GsiA.	0.405
gsiB_1	gsiB_6	BkAM31D_00115	BkAM31D_23855	Glutathione-binding protein GsiB precursor.	Glutathione-binding protein GsiB precursor.	0.539
gsiB_1	gsiC_1	BkAM31D_00115	BkAM31D_00105	Glutathione-binding protein GsiB precursor.	Glutathione transport system permease protein GsiC.	0.909
gsiB_1	gsiC_4	BkAM31D_00115	BkAM31D_09115	Glutathione-binding protein GsiB precursor.	Glutathione-binding protein GsiB precursor; Frameshift.	0.844
gsiB_1	gsiC_7	BkAM31D_00115	BkAM31D_23850	Glutathione-binding protein GsiB precursor.	Glutathione transport system permease protein GsiD; Frameshift.	0.846
gsiB_1	gsiD_1	BkAM31D_00115	BkAM31D_00110	Glutathione-binding protein GsiB precursor.	Glutathione transport system permease protein GsiD.	0.906
gsiB_1	nikC_2	BkAM31D_00115	BkAM31D_09120	Glutathione-binding protein GsiB precursor.	Nickel transport system permease protein NikC.	0.847
gsiB_1	oppD_1	BkAM31D_00115	BkAM31D_00100	Glutathione-binding protein GsiB precursor.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.805
gsiB_1	oppD_6	BkAM31D_00115	BkAM31D_23835	Glutathione-binding protein GsiB precursor.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.629
gsiB_1	oppF_1	BkAM31D_00115	BkAM31D_00095	Glutathione-binding protein GsiB precursor.	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.821

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