(39 nodes) Mixed, incl. Polysaccharide biosynthetic process, and Polysaccharide transport network (Nitrosomonas sp. Nm58)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDY09259.1	Uncharacterized protein involved in exopolysaccharide biosynthesis. (661 aa)
	SDY21978.1	Hypothetical protein. (130 aa)
	SDY30160.1	Uncharacterised nucleotidyltransferase. (371 aa)
	SDY30182.1	HprK-related kinase A. (302 aa)
	SDY30213.1	PqqD family protein, HPr-rel-A system. (98 aa)
	SDY30255.1	Hypothetical protein. (143 aa)
	SDY31571.1	Asparagine synthase (glutamine-hydrolysing). (615 aa)
	SDY31607.1	Diaminopimelate decarboxylase. (408 aa)
	SDY31659.1	acyl-CoA ligase (AMP-forming), exosortase A-associated. (527 aa)
	SDY31683.1	Two-component system, NtrC family, response regulator. (452 aa)
	SDY31717.1	Putative PEP-CTERM system histidine kinase. (693 aa)
	SDY31742.1	Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. (465 aa)
	SDY31778.1	Trypsin-like peptidase domain-containing protein. (270 aa)
	SDY64370.1	Polysaccharide export outer membrane protein. (404 aa)
	SDY64429.1	Tyrosine-protein kinase Etk/Wzc. (761 aa)
	SDY68397.1	PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family. (401 aa)
	SDY68427.1	phenylacetate-CoA ligase. (366 aa)
	SDY70390.1	Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (329 aa)
	SDY70419.1	Methyltransferase domain-containing protein. (259 aa)
	SDY70448.1	Probable O-glycosylation ligase, exosortase A-associated. (452 aa)
	SDY70479.1	Hypothetical protein. (421 aa)
	SDY73228.1	Acetyltransferase (GNAT) domain-containing protein. (384 aa)
	SDY73254.1	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase. (406 aa)
	SDY73287.1	Hypothetical protein. (44 aa)
	SDY73316.1	Hypothetical protein. (65 aa)
	SDY73345.1	TPR repeat-containing protein. (193 aa)
	SDY86150.1	UDP-N-acetylglucosamine 4-epimerase. (342 aa)
	SDY86202.1	Putative PEP-CTERM system TPR-repeat lipoprotein. (929 aa)
	SDY97442.1	N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated. (272 aa)
	SDZ01203.1	Asparagine synthase (glutamine-hydrolysing). (644 aa)
	SDZ01227.1	Sugar transferase, PEP-CTERM/EpsH1 system associated. (381 aa)
	SDZ01273.1	Sugar transferase, PEP-CTERM/EpsH1 system associated. (410 aa)
	SDZ01291.1	FemAB-related protein, PEP-CTERM system-associated. (360 aa)
	SDZ01312.1	Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily. (279 aa)
	SDZ01333.1	Putative secretion ATPase, PEP-CTERM locus subfamily. (288 aa)
	SDZ01351.1	Uncharacterized protein, PEP-CTERM system associated. (509 aa)
	SDZ01369.1	exopolysaccharide/PEP-CTERM locus tyrosine autokinase. (300 aa)
	SDZ01391.1	Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. (516 aa)
	SDZ01413.1	Polysaccharide export outer membrane protein. (208 aa)

Your Current Organism:

Nitrosomonas sp. Nm58

NCBI taxonomy Id: 200126
Other names: N. sp. Nm58

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY09259.1	SDY21978.1	SAMN05421754_1001331	SAMN05421754_10044	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Hypothetical protein.	0.672
SDY09259.1	SDY30160.1	SAMN05421754_1001331	SAMN05421754_100620	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Uncharacterised nucleotidyltransferase.	0.826
SDY09259.1	SDY30182.1	SAMN05421754_1001331	SAMN05421754_100621	Uncharacterized protein involved in exopolysaccharide biosynthesis.	HprK-related kinase A.	0.528
SDY09259.1	SDY31717.1	SAMN05421754_1001331	SAMN05421754_100668	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Putative PEP-CTERM system histidine kinase.	0.583
SDY09259.1	SDY31742.1	SAMN05421754_1001331	SAMN05421754_100669	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.	0.949
SDY09259.1	SDY31778.1	SAMN05421754_1001331	SAMN05421754_100670	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Trypsin-like peptidase domain-containing protein.	0.501
SDY09259.1	SDY64370.1	SAMN05421754_1001331	SAMN05421754_101630	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Polysaccharide export outer membrane protein.	0.672
SDY09259.1	SDY68397.1	SAMN05421754_1001331	SAMN05421754_101768	Uncharacterized protein involved in exopolysaccharide biosynthesis.	PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family.	0.636
SDY09259.1	SDY68427.1	SAMN05421754_1001331	SAMN05421754_101769	Uncharacterized protein involved in exopolysaccharide biosynthesis.	phenylacetate-CoA ligase.	0.435
SDY09259.1	SDY70390.1	SAMN05421754_1001331	SAMN05421754_101839	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.	0.542
SDY09259.1	SDY70448.1	SAMN05421754_1001331	SAMN05421754_101841	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Probable O-glycosylation ligase, exosortase A-associated.	0.679
SDY09259.1	SDY73345.1	SAMN05421754_1001331	SAMN05421754_101957	Uncharacterized protein involved in exopolysaccharide biosynthesis.	TPR repeat-containing protein.	0.627
SDY09259.1	SDY86202.1	SAMN05421754_1001331	SAMN05421754_102625	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Putative PEP-CTERM system TPR-repeat lipoprotein.	0.739
SDY09259.1	SDY97442.1	SAMN05421754_1001331	SAMN05421754_103712	Uncharacterized protein involved in exopolysaccharide biosynthesis.	N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated.	0.562
SDY09259.1	SDZ01227.1	SAMN05421754_1001331	SAMN05421754_104211	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Sugar transferase, PEP-CTERM/EpsH1 system associated.	0.647
SDY09259.1	SDZ01273.1	SAMN05421754_1001331	SAMN05421754_104213	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Sugar transferase, PEP-CTERM/EpsH1 system associated.	0.577
SDY09259.1	SDZ01291.1	SAMN05421754_1001331	SAMN05421754_104214	Uncharacterized protein involved in exopolysaccharide biosynthesis.	FemAB-related protein, PEP-CTERM system-associated.	0.617
SDY09259.1	SDZ01312.1	SAMN05421754_1001331	SAMN05421754_104215	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily.	0.427
SDY09259.1	SDZ01351.1	SAMN05421754_1001331	SAMN05421754_104217	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Uncharacterized protein, PEP-CTERM system associated.	0.804
SDY09259.1	SDZ01369.1	SAMN05421754_1001331	SAMN05421754_104218	Uncharacterized protein involved in exopolysaccharide biosynthesis.	exopolysaccharide/PEP-CTERM locus tyrosine autokinase.	0.589