(87 nodes) Nuclear speck network (Aegilops tauschii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A452XD70	Uncharacterized protein. (52 aa)
	A0A452XIJ4	Uncharacterized protein. (965 aa)
	A0A452XJ31	Uncharacterized protein. (280 aa)
	A0A452XKI7	FHA domain-containing protein. (423 aa)
	A0A452XR69	Uncharacterized protein. (411 aa)
	A0A452XSY2	HECT domain-containing protein. (1180 aa)
	A0A452XYZ6	Fibronectin type-III domain-containing protein. (615 aa)
	A0A452Y2Z6	Uncharacterized protein. (301 aa)
	A0A452Y7E8	RRM domain-containing protein. (479 aa)
	A0A452YER3	C2H2-type domain-containing protein. (467 aa)
	A0A452YI66	C2H2-type domain-containing protein. (423 aa)
	A0A452YIY5	RRM domain-containing protein. (481 aa)
	A0A452YVF0	RRM domain-containing protein. (199 aa)
	A0A452YYC3	Uncharacterized protein. (296 aa)
	A0A452ZAJ4	HECT domain-containing protein. (1522 aa)
	A0A453A5Y2	Uncharacterized protein. (1136 aa)
	A0A453A7X7	Uncharacterized protein. (268 aa)
	A0A453APZ3	Uncharacterized protein. (277 aa)
	A0A453AQ82	Uncharacterized protein. (330 aa)
	A0A453ASA0	Uncharacterized protein. (140 aa)
	A0A453AZU7	Uncharacterized protein. (1006 aa)
	A0A453AZZ2	RRM domain-containing protein. (265 aa)
	A0A453B1Z9	RRM domain-containing protein. (329 aa)
	A0A453B6T1	RRM domain-containing protein. (339 aa)
	A0A453BW55	Uncharacterized protein. (924 aa)
	A0A453C6L9	Uncharacterized protein. (56 aa)
	A0A453C6T0	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (140 aa)
	A0A453CFK1	Uncharacterized protein. (294 aa)
	A0A453CFT2	Myb-like domain-containing protein. (308 aa)
	A0A453CGF4	Uncharacterized protein. (947 aa)
	A0A453CKJ7	Uncharacterized protein. (171 aa)
	A0A453CRT5	Uncharacterized protein. (944 aa)
	A0A453DH48	DUF3700 domain-containing protein. (264 aa)
	A0A453EC43	Uncharacterized protein. (325 aa)
	A0A453ECV4	TPR_REGION domain-containing protein. (495 aa)
	A0A453ESF5	Uncharacterized protein. (572 aa)
	A0A453F226	Uncharacterized protein. (503 aa)
	A0A453FB60	Uncharacterized protein. (285 aa)
	A0A453G8N5	RRM domain-containing protein. (675 aa)
	A0A453GAM4	Uncharacterized protein. (1782 aa)
	A0A453GQS8	Uncharacterized protein. (1778 aa)
	A0A453GRM5	Uncharacterized protein. (416 aa)
	A0A453H1T2	Uncharacterized protein. (189 aa)
	A0A453HHQ1	Uncharacterized protein. (1005 aa)
	A0A453HRN5	Uncharacterized protein. (570 aa)
	A0A453HUN7	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (540 aa)
	A0A453HXI1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (549 aa)
	A0A453I120	RRM domain-containing protein. (241 aa)
	A0A453I4S3	Uncharacterized protein. (291 aa)
	A0A453ID09	RING-type domain-containing protein. (381 aa)
	A0A453IFK4	RRM domain-containing protein. (372 aa)
	A0A453J0P2	Uncharacterized protein; Belongs to the MT-A70-like family. (843 aa)
	A0A453J3V0	Uncharacterized protein. (408 aa)
	A0A453J4F0	RRM domain-containing protein. (1178 aa)
	A0A453JEI6	Uncharacterized protein. (277 aa)
	A0A453JSB7	Uncharacterized protein. (178 aa)
	A0A453JSG3	Uncharacterized protein. (99 aa)
	A0A453JXN9	RRM domain-containing protein. (375 aa)
	A0A453K1U0	Fibronectin type-III domain-containing protein. (743 aa)
	A0A453KE35	Uncharacterized protein. (71 aa)
	A0A453LAT3	RRM domain-containing protein. (452 aa)
	A0A453LL16	Uncharacterized protein. (233 aa)
	A0A453LN61	Uncharacterized protein. (626 aa)
	A0A453LRF7	DUF3700 domain-containing protein. (209 aa)
	A0A453MAS6	Uncharacterized protein. (97 aa)
	A0A453MV07	Uncharacterized protein. (307 aa)
	A0A453NBK2	C2H2-type domain-containing protein. (699 aa)
	A0A453NVS5	RRM domain-containing protein. (266 aa)
	A0A453P2H6	Uncharacterized protein. (247 aa)
	A0A453P5Q5	Uncharacterized protein. (946 aa)
	A0A453P5X6	Uncharacterized protein. (337 aa)
	A0A453P9K9	Uncharacterized protein; Belongs to the MT-A70-like family. (732 aa)
	A0A453PAM7	Uncharacterized protein. (173 aa)
	A0A453PM53	RRM domain-containing protein. (176 aa)
	A0A453PTM4	Uncharacterized protein. (267 aa)
	A0A453Q509	Uncharacterized protein. (309 aa)
	A0A453Q5G9	Uncharacterized protein. (69 aa)
	A0A453Q9L6	Uncharacterized protein. (976 aa)
	A0A453QHG1	RRM domain-containing protein. (274 aa)
	A0A453QZR5	Uncharacterized protein. (268 aa)
	A0A453R4X1	RRM domain-containing protein. (209 aa)
	A0A453RH35	Uncharacterized protein. (397 aa)
	A0A453RQ84	RRM domain-containing protein. (287 aa)
	A0A453S7G5	Uncharacterized protein. (672 aa)
	A0A453SA03	VIR_N domain-containing protein. (2241 aa)
	A0A453SG61	Tr-type G domain-containing protein. (1056 aa)
	A0A453SQD1	C2H2-type domain-containing protein. (601 aa)

Your Current Organism:

Aegilops tauschii

NCBI taxonomy Id: 200361
Other names: A. tauschii subsp. strangulata, Aegilops tauschii subsp. strangulata, Aegilops tauschii subsp. strangulata (Eig) Tzvelev

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A452XD70	A0A453APZ3	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A452XD70	A0A453AZU7	Uncharacterized protein.	Uncharacterized protein.	0.771
A0A452XD70	A0A453HHQ1	Uncharacterized protein.	Uncharacterized protein.	0.771
A0A452XD70	A0A453HRN5	Uncharacterized protein.	Uncharacterized protein.	0.742
A0A452XD70	A0A453ID09	Uncharacterized protein.	RING-type domain-containing protein.	0.474
A0A452XD70	A0A453SG61	Uncharacterized protein.	Tr-type G domain-containing protein.	0.821
A0A452XKI7	A0A453AZU7	FHA domain-containing protein.	Uncharacterized protein.	0.428
A0A452XKI7	A0A453ESF5	FHA domain-containing protein.	Uncharacterized protein.	0.641
A0A452XKI7	A0A453HHQ1	FHA domain-containing protein.	Uncharacterized protein.	0.428
A0A452XKI7	A0A453NBK2	FHA domain-containing protein.	C2H2-type domain-containing protein.	0.768
A0A452XKI7	A0A453SG61	FHA domain-containing protein.	Tr-type G domain-containing protein.	0.702
A0A452XKI7	A0A453SQD1	FHA domain-containing protein.	C2H2-type domain-containing protein.	0.768
A0A452XR69	A0A452Y7E8	Uncharacterized protein.	RRM domain-containing protein.	0.963
A0A452XR69	A0A452YIY5	Uncharacterized protein.	RRM domain-containing protein.	0.963
A0A452XR69	A0A452YVF0	Uncharacterized protein.	RRM domain-containing protein.	0.853
A0A452XR69	A0A452YYC3	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A452XR69	A0A453A7X7	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A452XR69	A0A453AQ82	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A452XR69	A0A453ASA0	Uncharacterized protein.	Uncharacterized protein.	0.844
A0A452XR69	A0A453AZZ2	Uncharacterized protein.	RRM domain-containing protein.	0.933