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dapH dapH GCA_900168775_03625 GCA_900168775_03625 GCA_900168775_03504 GCA_900168775_03504 GCA_900168775_03502 GCA_900168775_03502 DES48_10955 DES48_10955 ilvD ilvD DES48_103151 DES48_103151 argG argG argH argH DES48_10374 DES48_10374 DES48_10336 DES48_10336 DES48_11282 DES48_11282 DES48_1205 DES48_1205 DES48_106115 DES48_106115 aroD aroD DES48_10654 DES48_10654 eno eno gpmI gpmI tpiA tpiA pgk pgk DES48_10640 DES48_10640 DES48_1245 DES48_1245 DES48_102483 DES48_102483 prs prs proC-2 proC-2 DES48_102446 DES48_102446 DES48_102445 DES48_102445 rpiA rpiA DES48_102416 DES48_102416 DES48_102392 DES48_102392 glyA glyA DES48_102288 DES48_102288 DES48_102282 DES48_102282 trpA trpA trpB trpB trpF trpF trpC trpC trpD trpD DES48_102166 DES48_102166 DES48_102164 DES48_102164 DES48_102162 DES48_102162 DES48_102154 DES48_102154 argB argB argJ argJ argC argC DES48_102120 DES48_102120 DES48_102109 DES48_102109 serC serC fda fda DES48_11317 DES48_11317 DES48_103243 DES48_103243 DES48_103244 DES48_103244 proC proC leuD leuD metAA metAA DES48_10568 DES48_10568 DES48_105104 DES48_105104 DES48_105139 DES48_105139 DES48_105156 DES48_105156 luxS luxS DES48_1075 DES48_1075 DES48_10748 DES48_10748 metK metK DES48_106133 DES48_106133 dapF dapF thrB thrB DES48_106117 DES48_106117 DES48_106116 DES48_106116 leuC leuC leuA leuA ilvC ilvC DES48_11025 DES48_11025 DES48_11024 DES48_11024 DES48_1108 DES48_1108 DES48_1102 DES48_1102 DES48_101586 DES48_101586 DES48_101581 DES48_101581 DES48_101580 DES48_101580 asd asd DES48_101490 DES48_101490 dapA dapA DES48_101455 DES48_101455 DES48_101447 DES48_101447 DES48_101442 DES48_101442 DES48_101425 DES48_101425 hisZ hisZ hisG hisG hisD hisD hisB hisB hisH hisH hisA hisA hisF hisF hisI hisI DES48_101402 DES48_101402 DES48_101400 DES48_101400 proB proB proA proA ilvA ilvA DES48_101390 DES48_101390 dapA-2 dapA-2 DES48_101330 DES48_101330 DES48_101297 DES48_101297 dapB dapB aroA aroA DES48_101276 DES48_101276 hisC hisC DES48_101274 DES48_101274 aroB aroB aroC aroC DES48_101247 DES48_101247 DES48_101241 DES48_101241 lysA lysA GCA_900168775_02115 GCA_900168775_02115 rex rex DES48_10428 DES48_10428 pfkA pfkA pfkA-2 pfkA-2 DES48_10472 DES48_10472 DES48_10473 DES48_10473 DES48_10476 DES48_10476 DES48_10477 DES48_10477 DES48_104134 DES48_104134 DES48_1167 DES48_1167 pheA pheA DES48_1012 DES48_1012 mtnN mtnN aroE aroE aroK aroK DES48_101184 DES48_101184 DES48_101198 DES48_101198 DES48_11117 DES48_11117 DES48_10841 DES48_10841 DES48_108142 DES48_108142 DES48_11448 DES48_11448 rsmA rsmA prs-2 prs-2 DES48_1147 DES48_1147
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
dapHUnannotated protein; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. (240 aa)
GCA_900168775_03625Unannotated protein. (401 aa)
GCA_900168775_03504Unannotated protein. (131 aa)
GCA_900168775_03502Unannotated protein. (189 aa)
DES48_10955Unannotated protein. (186 aa)
ilvDUnannotated protein; Belongs to the IlvD/Edd family. (560 aa)
DES48_103151Unannotated protein; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (423 aa)
argGUnannotated protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (419 aa)
argHUnannotated protein. (476 aa)
DES48_10374Unannotated protein; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. (316 aa)
DES48_10336Unannotated protein. (170 aa)
DES48_11282Unannotated protein. (219 aa)
DES48_1205Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family. (312 aa)
DES48_106115Unannotated protein. (320 aa)
aroDUnannotated protein; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. (253 aa)
DES48_10654Unannotated protein. (284 aa)
enoUnannotated protein; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (428 aa)
gpmIUnannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family. (512 aa)
tpiAUnannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (252 aa)
pgkUnannotated protein; Belongs to the phosphoglycerate kinase family. (393 aa)
DES48_10640Unannotated protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (335 aa)
DES48_1245Unannotated protein. (264 aa)
DES48_102483Unannotated protein. (346 aa)
prsUnannotated protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (317 aa)
proC-2Unannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (267 aa)
DES48_102446Unannotated protein. (368 aa)
DES48_102445Unannotated protein. (369 aa)
rpiAUnannotated protein; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (227 aa)
DES48_102416Unannotated protein. (249 aa)
DES48_102392Unannotated protein. (388 aa)
glyAUnannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (412 aa)
DES48_102288Unannotated protein. (285 aa)
DES48_102282Unannotated protein. (261 aa)
trpAUnannotated protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (259 aa)
trpBUnannotated protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (401 aa)
trpFUnannotated protein; Belongs to the TrpF family. (202 aa)
trpCUnannotated protein; Belongs to the TrpC family. (257 aa)
trpDUnannotated protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). (340 aa)
DES48_102166Unannotated protein; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (666 aa)
DES48_102164Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family. (220 aa)
DES48_102162Unannotated protein. (147 aa)
DES48_102154Unannotated protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. (214 aa)
argBUnannotated protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (267 aa)
argJUnannotated protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. (408 aa)
argCUnannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (346 aa)
DES48_102120Unannotated protein. (100 aa)
DES48_102109Unannotated protein. (391 aa)
serCUnannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (362 aa)
fdaUnannotated protein; Belongs to the class I fructose-bisphosphate aldolase family. (297 aa)
DES48_11317Unannotated protein. (152 aa)
DES48_103243Unannotated protein. (142 aa)
DES48_103244Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (528 aa)
proCUnannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (270 aa)
leuDUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (196 aa)
metAAUnannotated protein; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (302 aa)
DES48_10568Unannotated protein. (615 aa)
DES48_105104Unannotated protein. (387 aa)
DES48_105139Unannotated protein. (380 aa)
DES48_105156Unannotated protein. (458 aa)
luxSUnannotated protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (154 aa)
DES48_1075Unannotated protein; Belongs to the TPP enzyme family. (571 aa)
DES48_10748Unannotated protein. (391 aa)
metKUnannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (398 aa)
DES48_106133Unannotated protein. (392 aa)
dapFUnannotated protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (286 aa)
thrBUnannotated protein; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. (295 aa)
DES48_106117Unannotated protein; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. (353 aa)
DES48_106116Unannotated protein. (430 aa)
leuCUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (471 aa)
leuAUnannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (515 aa)
ilvCUnannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (343 aa)
DES48_11025Unannotated protein. (174 aa)
DES48_11024Unannotated protein. (577 aa)
DES48_1108Unannotated protein. (385 aa)
DES48_1102Unannotated protein; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. (374 aa)
DES48_101586Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family. (217 aa)
DES48_101581Unannotated protein; Belongs to the iron-sulfur dependent L-serine dehydratase family. (220 aa)
DES48_101580Unannotated protein; Belongs to the iron-sulfur dependent L-serine dehydratase family. (294 aa)
asdUnannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (348 aa)
DES48_101490Unannotated protein; Belongs to the aspartokinase family. (408 aa)
dapAUnannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (292 aa)
DES48_101455Unannotated protein. (444 aa)
DES48_101447Unannotated protein; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (668 aa)
DES48_101442Unannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (903 aa)
DES48_101425Unannotated protein; Belongs to the PHP hydrolase family. HisK subfamily. (275 aa)
hisZUnannotated protein; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. (374 aa)
hisGUnannotated protein; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. (206 aa)
hisDUnannotated protein; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (430 aa)
hisBUnannotated protein. (195 aa)
hisHUnannotated protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (199 aa)
hisAUnannotated protein. (235 aa)
hisFUnannotated protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (252 aa)
hisIUnannotated protein; In the N-terminal section; belongs to the PRA-CH family. (218 aa)
DES48_101402Unannotated protein. (1519 aa)
DES48_101400Unannotated protein. (359 aa)
proBUnannotated protein; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. (371 aa)
proAUnannotated protein; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (414 aa)
ilvAUnannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (420 aa)
DES48_101390Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family. (306 aa)
dapA-2Unannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (296 aa)
DES48_101330Unannotated protein. (181 aa)
DES48_101297Unannotated protein. (395 aa)
dapBUnannotated protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (266 aa)
aroAUnannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. (429 aa)
DES48_101276Unannotated protein. (366 aa)
hisCUnannotated protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (368 aa)
DES48_101274Unannotated protein; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. (121 aa)
aroBUnannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). (359 aa)
aroCUnannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (387 aa)
DES48_101247Unannotated protein. (211 aa)
DES48_101241Unannotated protein. (358 aa)
lysAUnannotated protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (432 aa)
GCA_900168775_02115Unannotated protein. (200 aa)
rexUnannotated protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (214 aa)
DES48_10428Unannotated protein. (353 aa)
pfkAUnannotated protein; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (318 aa)
pfkA-2Unannotated protein; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (319 aa)
DES48_10472Unannotated protein; Belongs to the pyruvate kinase family. (587 aa)
DES48_10473Unannotated protein. (129 aa)
DES48_10476Unannotated protein; Belongs to the citrate synthase family. (372 aa)
DES48_10477Unannotated protein. (424 aa)
DES48_104134Unannotated protein. (369 aa)
DES48_1167Unannotated protein; Belongs to the UPF0735 family. (149 aa)
pheAUnannotated protein. (284 aa)
DES48_1012Unannotated protein. (322 aa)
mtnNUnannotated protein; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (230 aa)
aroEUnannotated protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). (278 aa)
aroKUnannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (166 aa)
DES48_101184Unannotated protein; Belongs to the aspartokinase family. (450 aa)
DES48_101198Unannotated protein. (332 aa)
DES48_11117Unannotated protein. (140 aa)
DES48_10841Unannotated protein; Belongs to the UPF0237 family. (90 aa)
DES48_108142Unannotated protein. (357 aa)
DES48_11448Unannotated protein. (96 aa)
rsmAUnannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (288 aa)
prs-2Unannotated protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (317 aa)
DES48_1147Unannotated protein; Belongs to the phosphoglycerate mutase family. (188 aa)
Your Current Organism:
Paraliobacillus ryukyuensis
NCBI taxonomy Id: 200904
Other names: DSM 15140, IAM 15001, JCM 21472, NBRC 100001, NRIC 0520, P. ryukyuensis, Paraliobacillus ryukyuensis Ishikawa et al. 2003, strain O15-7
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