(5 nodes) Nuclear pore inner ring, and Nuclear pore nuclear basket network (Ooceraea biroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DMN91_012241	Nuclear pore complex protein. (1319 aa)
	X777_13866	Nucleoporin NDC1. (440 aa)
	X777_09911	Nuclear pore membrane glycoprotein. (1590 aa)
	X777_04094	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (318 aa)
	X777_01063	Nucleoporin-like protein. (1872 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_012241	X777_01063	A0A026VTC4	A0A026WQY4	Nuclear pore complex protein.	Nucleoporin-like protein.	0.991
DMN91_012241	X777_04094	A0A026VTC4	A0A026WIM9	Nuclear pore complex protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.999
DMN91_012241	X777_09911	A0A026VTC4	A0A026W886	Nuclear pore complex protein.	Nuclear pore membrane glycoprotein.	0.966
DMN91_012241	X777_13866	A0A026VTC4	A0A026VXZ7	Nuclear pore complex protein.	Nucleoporin NDC1.	0.984
X777_01063	DMN91_012241	A0A026WQY4	A0A026VTC4	Nucleoporin-like protein.	Nuclear pore complex protein.	0.991
X777_01063	X777_04094	A0A026WQY4	A0A026WIM9	Nucleoporin-like protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.977
X777_01063	X777_09911	A0A026WQY4	A0A026W886	Nucleoporin-like protein.	Nuclear pore membrane glycoprotein.	0.941
X777_01063	X777_13866	A0A026WQY4	A0A026VXZ7	Nucleoporin-like protein.	Nucleoporin NDC1.	0.962
X777_04094	DMN91_012241	A0A026WIM9	A0A026VTC4	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	Nuclear pore complex protein.	0.999
X777_04094	X777_01063	A0A026WIM9	A0A026WQY4	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	Nucleoporin-like protein.	0.977
X777_04094	X777_09911	A0A026WIM9	A0A026W886	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	Nuclear pore membrane glycoprotein.	0.966
X777_04094	X777_13866	A0A026WIM9	A0A026VXZ7	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	Nucleoporin NDC1.	0.981
X777_09911	DMN91_012241	A0A026W886	A0A026VTC4	Nuclear pore membrane glycoprotein.	Nuclear pore complex protein.	0.966
X777_09911	X777_01063	A0A026W886	A0A026WQY4	Nuclear pore membrane glycoprotein.	Nucleoporin-like protein.	0.941
X777_09911	X777_04094	A0A026W886	A0A026WIM9	Nuclear pore membrane glycoprotein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.966
X777_09911	X777_13866	A0A026W886	A0A026VXZ7	Nuclear pore membrane glycoprotein.	Nucleoporin NDC1.	0.941
X777_13866	DMN91_012241	A0A026VXZ7	A0A026VTC4	Nucleoporin NDC1.	Nuclear pore complex protein.	0.984
X777_13866	X777_01063	A0A026VXZ7	A0A026WQY4	Nucleoporin NDC1.	Nucleoporin-like protein.	0.962
X777_13866	X777_04094	A0A026VXZ7	A0A026WIM9	Nucleoporin NDC1.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.981
X777_13866	X777_09911	A0A026VXZ7	A0A026W886	Nucleoporin NDC1.	Nuclear pore membrane glycoprotein.	0.941