(22 nodes) mRNA export from nucleus network (Ooceraea biroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	DMN91_012495	ATP-dependent RNA helicase WM6. (424 aa)
	X777_15262	THO complex subunit 6-like protein. (331 aa)
	DMN91_012022	mRNA export factor. (355 aa)
	X777_11571	NTF2-related export protein. (148 aa)
	DMN91_009816	THO complex subunit 5-like protein. (667 aa)
	X777_06580	Nuclear RNA export factor. (298 aa)
	X777_06581	Tap-RNA_bind domain-containing protein. (219 aa)
	X777_05515	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (297 aa)
	X777_04476	Protein xmas-2. (1647 aa)
	X777_04486	THO complex subunit. (654 aa)
	X777_04355	Uncharacterized protein. (308 aa)
	X777_04247	Nuclear RNA export factor. (708 aa)
	X777_04354	Zinc finger CCCH domain-containing protein 11A. (205 aa)
	DMN91_002662	RNA and export factor-binding protein. (249 aa)
	DMN91_003321	THO complex subunit 7-like protein. (203 aa)
	X777_14695	Polymerase delta-interacting protein. (304 aa)
	DMN91_011117	Nuclear RNA export factor. (529 aa)
	X777_14908	THO complex subunit. (1403 aa)
	e(y)2	Enhancer of yellow 2 transcription factor; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (96 aa)
	X777_15326	THO complex subunit. (321 aa)
	X777_08181	80 kDa MCM3-associated protein. (366 aa)
	DMN91_004226	SAP domain-containing ribonucleoprotein. (250 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_002662	DMN91_003321	A0A026WLL2	A0A026WP32	RNA and export factor-binding protein.	THO complex subunit 7-like protein.	0.896
DMN91_002662	DMN91_004226	A0A026WLL2	A0A026X2M8	RNA and export factor-binding protein.	SAP domain-containing ribonucleoprotein.	0.954
DMN91_002662	DMN91_009816	A0A026WLL2	A0A026W386	RNA and export factor-binding protein.	THO complex subunit 5-like protein.	0.993
DMN91_002662	DMN91_011117	A0A026WLL2	A0A026WUB4	RNA and export factor-binding protein.	Nuclear RNA export factor.	0.984
DMN91_002662	DMN91_012022	A0A026WLL2	A0A026W1H0	RNA and export factor-binding protein.	mRNA export factor.	0.902
DMN91_002662	DMN91_012495	A0A026WLL2	A0A026VV72	RNA and export factor-binding protein.	ATP-dependent RNA helicase WM6.	0.999
DMN91_002662	X777_04247	A0A026WLL2	A0A026WJ15	RNA and export factor-binding protein.	Nuclear RNA export factor.	0.985
DMN91_002662	X777_04354	A0A026WLL2	A0A026WJV3	RNA and export factor-binding protein.	Zinc finger CCCH domain-containing protein 11A.	0.534
DMN91_002662	X777_04355	A0A026WLL2	A0A026WH86	RNA and export factor-binding protein.	Uncharacterized protein.	0.534
DMN91_002662	X777_04476	A0A026WLL2	A0A026WG31	RNA and export factor-binding protein.	Protein xmas-2.	0.651
DMN91_002662	X777_04486	A0A026WLL2	A0A026WG44	RNA and export factor-binding protein.	THO complex subunit.	0.995
DMN91_002662	X777_06580	A0A026WLL2	A0A026WCT6	RNA and export factor-binding protein.	Nuclear RNA export factor.	0.984
DMN91_002662	X777_06581	A0A026WLL2	A0A026WD45	RNA and export factor-binding protein.	Tap-RNA_bind domain-containing protein.	0.850
DMN91_002662	X777_11571	A0A026WLL2	A0A026W2A5	RNA and export factor-binding protein.	NTF2-related export protein.	0.652
DMN91_002662	X777_14695	A0A026WLL2	A0A026WRC9	RNA and export factor-binding protein.	Polymerase delta-interacting protein.	0.785
DMN91_002662	X777_14908	A0A026WLL2	A0A026WUF4	RNA and export factor-binding protein.	THO complex subunit.	0.998
DMN91_002662	X777_15262	A0A026WLL2	A0A026VVS6	RNA and export factor-binding protein.	THO complex subunit 6-like protein.	0.877
DMN91_002662	X777_15326	A0A026WLL2	A0A026WY26	RNA and export factor-binding protein.	THO complex subunit.	0.991
DMN91_002662	e(y)2	A0A026WLL2	A0A026WV43	RNA and export factor-binding protein.	Enhancer of yellow 2 transcription factor; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.600
DMN91_003321	DMN91_002662	A0A026WP32	A0A026WLL2	THO complex subunit 7-like protein.	RNA and export factor-binding protein.	0.896