(10 nodes) Transcription export complex network (Ooceraea biroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DMN91_012495	ATP-dependent RNA helicase WM6. (424 aa)
	X777_15262	THO complex subunit 6-like protein. (331 aa)
	DMN91_009816	THO complex subunit 5-like protein. (667 aa)
	X777_04486	THO complex subunit. (654 aa)
	DMN91_002662	RNA and export factor-binding protein. (249 aa)
	DMN91_003321	THO complex subunit 7-like protein. (203 aa)
	X777_14695	Polymerase delta-interacting protein. (304 aa)
	X777_14908	THO complex subunit. (1403 aa)
	X777_15326	THO complex subunit. (321 aa)
	DMN91_004226	SAP domain-containing ribonucleoprotein. (250 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_002662	DMN91_003321	A0A026WLL2	A0A026WP32	RNA and export factor-binding protein.	THO complex subunit 7-like protein.	0.896
DMN91_002662	DMN91_004226	A0A026WLL2	A0A026X2M8	RNA and export factor-binding protein.	SAP domain-containing ribonucleoprotein.	0.954
DMN91_002662	DMN91_009816	A0A026WLL2	A0A026W386	RNA and export factor-binding protein.	THO complex subunit 5-like protein.	0.993
DMN91_002662	DMN91_012495	A0A026WLL2	A0A026VV72	RNA and export factor-binding protein.	ATP-dependent RNA helicase WM6.	0.999
DMN91_002662	X777_04486	A0A026WLL2	A0A026WG44	RNA and export factor-binding protein.	THO complex subunit.	0.995
DMN91_002662	X777_14695	A0A026WLL2	A0A026WRC9	RNA and export factor-binding protein.	Polymerase delta-interacting protein.	0.785
DMN91_002662	X777_14908	A0A026WLL2	A0A026WUF4	RNA and export factor-binding protein.	THO complex subunit.	0.998
DMN91_002662	X777_15262	A0A026WLL2	A0A026VVS6	RNA and export factor-binding protein.	THO complex subunit 6-like protein.	0.877
DMN91_002662	X777_15326	A0A026WLL2	A0A026WY26	RNA and export factor-binding protein.	THO complex subunit.	0.991
DMN91_003321	DMN91_002662	A0A026WP32	A0A026WLL2	THO complex subunit 7-like protein.	RNA and export factor-binding protein.	0.896
DMN91_003321	DMN91_004226	A0A026WP32	A0A026X2M8	THO complex subunit 7-like protein.	SAP domain-containing ribonucleoprotein.	0.874
DMN91_003321	DMN91_009816	A0A026WP32	A0A026W386	THO complex subunit 7-like protein.	THO complex subunit 5-like protein.	0.996
DMN91_003321	DMN91_012495	A0A026WP32	A0A026VV72	THO complex subunit 7-like protein.	ATP-dependent RNA helicase WM6.	0.969
DMN91_003321	X777_04486	A0A026WP32	A0A026WG44	THO complex subunit 7-like protein.	THO complex subunit.	0.999
DMN91_003321	X777_14695	A0A026WP32	A0A026WRC9	THO complex subunit 7-like protein.	Polymerase delta-interacting protein.	0.726
DMN91_003321	X777_14908	A0A026WP32	A0A026WUF4	THO complex subunit 7-like protein.	THO complex subunit.	0.994
DMN91_003321	X777_15262	A0A026WP32	A0A026VVS6	THO complex subunit 7-like protein.	THO complex subunit 6-like protein.	0.988
DMN91_003321	X777_15326	A0A026WP32	A0A026WY26	THO complex subunit 7-like protein.	THO complex subunit.	0.995
DMN91_004226	DMN91_002662	A0A026X2M8	A0A026WLL2	SAP domain-containing ribonucleoprotein.	RNA and export factor-binding protein.	0.954
DMN91_004226	DMN91_003321	A0A026X2M8	A0A026WP32	SAP domain-containing ribonucleoprotein.	THO complex subunit 7-like protein.	0.874