13 items (Ooceraea biroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DMN91_010256	BED-type domain-containing protein. (516 aa)
	X777_12870	Testis-expressed protein. (940 aa)
	X777_10379	Kinetochore-associated protein. (1777 aa)
	X777_08897	Mitotic checkpoint serine/threonine-protein kinase BUB1. (1446 aa)
	X777_06227	Dual specificity protein kinase Ttk. (968 aa)
	X777_04929	Nucleoprotein TPR. (2267 aa)
	X777_02489	Centromere/kinetochore protein zw10-like protein. (690 aa)
	X777_15916	Mitotic spindle assembly checkpoint protein MAD1. (677 aa)
	DMN91_005045	Mitotic spindle assembly checkpoint protein MAD2A. (214 aa)
	X777_08359	Uncharacterized protein. (182 aa)
	X777_08360	Zwilch-like protein. (714 aa)
	DMN91_007492	Mitotic checkpoint protein BUB3. (326 aa)
	X777_10211	Chromodomain Y-like protein. (1169 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_005045	DMN91_007492	A0A026WY52	A0A026WZW0	Mitotic spindle assembly checkpoint protein MAD2A.	Mitotic checkpoint protein BUB3.	0.994
DMN91_005045	X777_02489	A0A026WY52	A0A026WMT4	Mitotic spindle assembly checkpoint protein MAD2A.	Centromere/kinetochore protein zw10-like protein.	0.736
DMN91_005045	X777_06227	A0A026WY52	A0A026WDQ5	Mitotic spindle assembly checkpoint protein MAD2A.	Dual specificity protein kinase Ttk.	0.989
DMN91_005045	X777_08359	A0A026WY52	A0A026WYR2	Mitotic spindle assembly checkpoint protein MAD2A.	Uncharacterized protein.	0.693
DMN91_005045	X777_08360	A0A026WY52	A0A026WZB8	Mitotic spindle assembly checkpoint protein MAD2A.	Zwilch-like protein.	0.693
DMN91_005045	X777_08897	A0A026WY52	A0A026W7Z7	Mitotic spindle assembly checkpoint protein MAD2A.	Mitotic checkpoint serine/threonine-protein kinase BUB1.	0.999
DMN91_005045	X777_10379	A0A026WY52	A0A026W655	Mitotic spindle assembly checkpoint protein MAD2A.	Kinetochore-associated protein.	0.824
DMN91_005045	X777_15916	A0A026WY52	A0A026WTJ1	Mitotic spindle assembly checkpoint protein MAD2A.	Mitotic spindle assembly checkpoint protein MAD1.	0.998
DMN91_007492	DMN91_005045	A0A026WZW0	A0A026WY52	Mitotic checkpoint protein BUB3.	Mitotic spindle assembly checkpoint protein MAD2A.	0.994
DMN91_007492	DMN91_010256	A0A026WZW0	A0A026W632	Mitotic checkpoint protein BUB3.	BED-type domain-containing protein.	0.959
DMN91_007492	X777_02489	A0A026WZW0	A0A026WMT4	Mitotic checkpoint protein BUB3.	Centromere/kinetochore protein zw10-like protein.	0.802
DMN91_007492	X777_06227	A0A026WZW0	A0A026WDQ5	Mitotic checkpoint protein BUB3.	Dual specificity protein kinase Ttk.	0.727
DMN91_007492	X777_08359	A0A026WZW0	A0A026WYR2	Mitotic checkpoint protein BUB3.	Uncharacterized protein.	0.615
DMN91_007492	X777_08360	A0A026WZW0	A0A026WZB8	Mitotic checkpoint protein BUB3.	Zwilch-like protein.	0.615
DMN91_007492	X777_08897	A0A026WZW0	A0A026W7Z7	Mitotic checkpoint protein BUB3.	Mitotic checkpoint serine/threonine-protein kinase BUB1.	0.999
DMN91_007492	X777_10379	A0A026WZW0	A0A026W655	Mitotic checkpoint protein BUB3.	Kinetochore-associated protein.	0.529
DMN91_007492	X777_15916	A0A026WZW0	A0A026WTJ1	Mitotic checkpoint protein BUB3.	Mitotic spindle assembly checkpoint protein MAD1.	0.902
DMN91_010256	DMN91_007492	A0A026W632	A0A026WZW0	BED-type domain-containing protein.	Mitotic checkpoint protein BUB3.	0.959
DMN91_010256	X777_08897	A0A026W632	A0A026W7Z7	BED-type domain-containing protein.	Mitotic checkpoint serine/threonine-protein kinase BUB1.	0.441
X777_02489	DMN91_005045	A0A026WMT4	A0A026WY52	Centromere/kinetochore protein zw10-like protein.	Mitotic spindle assembly checkpoint protein MAD2A.	0.736