(7 nodes) BORC complex network (Ooceraea biroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DMN91_012498	Loss of heterozygosity 12 chromosomal region 1 protein-like protein. (273 aa)
	DMN91_010445	SNARE-associated protein Snapin. (157 aa)
	X777_02600	KxDL domain-containing protein. (201 aa)
	DMN91_006560	Uncharacterized protein. (276 aa)
	DMN91_012862	Uncharacterized protein. (174 aa)
	DMN91_002781	Biogenesis of lysosome-related organelles complex 1 subunit. (161 aa)
	X777_13864	Uncharacterized protein. (105 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_002781	DMN91_006560	A0A026W4V2	A0A026X366	Biogenesis of lysosome-related organelles complex 1 subunit.	Uncharacterized protein.	0.717
DMN91_002781	DMN91_010445	A0A026W4V2	A0A026WSI4	Biogenesis of lysosome-related organelles complex 1 subunit.	SNARE-associated protein Snapin.	0.931
DMN91_002781	DMN91_012498	A0A026W4V2	A0A026VW31	Biogenesis of lysosome-related organelles complex 1 subunit.	Loss of heterozygosity 12 chromosomal region 1 protein-like protein.	0.713
DMN91_002781	DMN91_012862	A0A026W4V2	A0A026W583	Biogenesis of lysosome-related organelles complex 1 subunit.	Uncharacterized protein.	0.733
DMN91_002781	X777_02600	A0A026W4V2	A0A026WQG3	Biogenesis of lysosome-related organelles complex 1 subunit.	KxDL domain-containing protein.	0.720
DMN91_002781	X777_13864	A0A026W4V2	A0A026VZN8	Biogenesis of lysosome-related organelles complex 1 subunit.	Uncharacterized protein.	0.731
DMN91_006560	DMN91_002781	A0A026X366	A0A026W4V2	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit.	0.717
DMN91_006560	DMN91_010445	A0A026X366	A0A026WSI4	Uncharacterized protein.	SNARE-associated protein Snapin.	0.751
DMN91_006560	DMN91_012498	A0A026X366	A0A026VW31	Uncharacterized protein.	Loss of heterozygosity 12 chromosomal region 1 protein-like protein.	0.761
DMN91_006560	DMN91_012862	A0A026X366	A0A026W583	Uncharacterized protein.	Uncharacterized protein.	0.748
DMN91_006560	X777_02600	A0A026X366	A0A026WQG3	Uncharacterized protein.	KxDL domain-containing protein.	0.868
DMN91_006560	X777_13864	A0A026X366	A0A026VZN8	Uncharacterized protein.	Uncharacterized protein.	0.742
DMN91_010445	DMN91_002781	A0A026WSI4	A0A026W4V2	SNARE-associated protein Snapin.	Biogenesis of lysosome-related organelles complex 1 subunit.	0.931
DMN91_010445	DMN91_006560	A0A026WSI4	A0A026X366	SNARE-associated protein Snapin.	Uncharacterized protein.	0.751
DMN91_010445	DMN91_012498	A0A026WSI4	A0A026VW31	SNARE-associated protein Snapin.	Loss of heterozygosity 12 chromosomal region 1 protein-like protein.	0.764
DMN91_010445	DMN91_012862	A0A026WSI4	A0A026W583	SNARE-associated protein Snapin.	Uncharacterized protein.	0.659
DMN91_010445	X777_02600	A0A026WSI4	A0A026WQG3	SNARE-associated protein Snapin.	KxDL domain-containing protein.	0.720
DMN91_010445	X777_13864	A0A026WSI4	A0A026VZN8	SNARE-associated protein Snapin.	Uncharacterized protein.	0.727
DMN91_012498	DMN91_002781	A0A026VW31	A0A026W4V2	Loss of heterozygosity 12 chromosomal region 1 protein-like protein.	Biogenesis of lysosome-related organelles complex 1 subunit.	0.713
DMN91_012498	DMN91_006560	A0A026VW31	A0A026X366	Loss of heterozygosity 12 chromosomal region 1 protein-like protein.	Uncharacterized protein.	0.761