(22 nodes) ATP-dependent protein folding chaperone network (Ooceraea biroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	X777_08592	Uncharacterized protein. (159 aa)
	X777_07107	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family. (682 aa)
	DMN91_005157	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family. (654 aa)
	DMN91_004744	60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family. (567 aa)
	DMN91_004653	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family. (656 aa)
	X777_13750	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family. (641 aa)
	DMN91_009889	Uncharacterized protein. (297 aa)
	DMN91_012572	Hypoxia up-regulated protein. (951 aa)
	X777_15681	T-complex protein 1 subunit zeta. (513 aa)
	X777_00006	Uncharacterized protein. (77 aa)
	DMN91_004743	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family. (104 aa)
	DMN91_002589	Heat shock protein. (867 aa)
	X777_07383	T-complex protein 1 subunit beta. (490 aa)
	X777_06048	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial. (587 aa)
	DMN91_004757	Heat shock protein 75 kDa, mitochondrial. (692 aa)
	DMN91_008741	T-complex protein 1 subunit epsilon. (541 aa)
	X777_02215	T-complex protein 1 subunit alpha. (557 aa)
	DMN91_010647	Endoplasmin. (790 aa)
	X777_14607	Heat shock 70 kDa protein. (227 aa)
	X777_12143	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (541 aa)
	DMN91_001993	T-complex protein 1 subunit theta. (545 aa)
	DMN91_007616	T-complex protein 1 subunit delta. (540 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_001993	DMN91_002589	A0A026W243	A0A026WCH4	T-complex protein 1 subunit theta.	Heat shock protein.	0.862
DMN91_001993	DMN91_004653	A0A026W243	A0A026WBY7	T-complex protein 1 subunit theta.	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family.	0.684
DMN91_001993	DMN91_004743	A0A026W243	A0A026WCA2	T-complex protein 1 subunit theta.	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	0.733
DMN91_001993	DMN91_004744	A0A026W243	A0A026WB63	T-complex protein 1 subunit theta.	60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family.	0.816
DMN91_001993	DMN91_004757	A0A026W243	A0A026WHX1	T-complex protein 1 subunit theta.	Heat shock protein 75 kDa, mitochondrial.	0.444
DMN91_001993	DMN91_007616	A0A026W243	A0A026W822	T-complex protein 1 subunit theta.	T-complex protein 1 subunit delta.	0.999
DMN91_001993	DMN91_008741	A0A026W243	A0A026WP54	T-complex protein 1 subunit theta.	T-complex protein 1 subunit epsilon.	0.999
DMN91_001993	X777_02215	A0A026W243	A0A026WPB8	T-complex protein 1 subunit theta.	T-complex protein 1 subunit alpha.	0.999
DMN91_001993	X777_07107	A0A026W243	A0A026WAN2	T-complex protein 1 subunit theta.	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family.	0.474
DMN91_001993	X777_07383	A0A026W243	A0A026WCT3	T-complex protein 1 subunit theta.	T-complex protein 1 subunit beta.	0.999
DMN91_001993	X777_08592	A0A026W243	A0A026W8Q4	T-complex protein 1 subunit theta.	Uncharacterized protein.	0.816
DMN91_001993	X777_12143	A0A026W243	A0A026W0P5	T-complex protein 1 subunit theta.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
DMN91_001993	X777_15681	A0A026W243	A0A026VUX8	T-complex protein 1 subunit theta.	T-complex protein 1 subunit zeta.	0.999
DMN91_002589	DMN91_001993	A0A026WCH4	A0A026W243	Heat shock protein.	T-complex protein 1 subunit theta.	0.862
DMN91_002589	DMN91_004653	A0A026WCH4	A0A026WBY7	Heat shock protein.	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family.	0.887
DMN91_002589	DMN91_004743	A0A026WCH4	A0A026WCA2	Heat shock protein.	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	0.840
DMN91_002589	DMN91_004744	A0A026WCH4	A0A026WB63	Heat shock protein.	60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family.	0.694
DMN91_002589	DMN91_004757	A0A026WCH4	A0A026WHX1	Heat shock protein.	Heat shock protein 75 kDa, mitochondrial.	0.824
DMN91_002589	DMN91_005157	A0A026WCH4	A0A026WAP1	Heat shock protein.	Heat shock 70 kDa protein cognate; Belongs to the heat shock protein 70 family.	0.862
DMN91_002589	DMN91_007616	A0A026WCH4	A0A026W822	Heat shock protein.	T-complex protein 1 subunit delta.	0.569