(30 nodes) Transport of the SLBP independent Mature mRNA network (Ooceraea biroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DMN91_002662	RNA and export factor-binding protein. (249 aa)
	DMN91_002981	Putative nucleoporin Nup58. (490 aa)
	DMN91_011854	Nuclear pore complex protein Nup98-Nup96. (1922 aa)
	X777_01063	Nucleoporin-like protein. (1872 aa)
	X777_01208	E3 SUMO-protein ligase RanBP2. (2666 aa)
	DMN91_008762	Nuclear pore protein. (827 aa)
	X777_15021	Nuclear pore complex protein Nup88. (753 aa)
	DMN91_010996	Nuclear pore complex protein-like protein. (1413 aa)
	X777_06008	Nuclear pore glycoprotein p62. (399 aa)
	X777_08503	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (211 aa)
	X777_09911	Nuclear pore membrane glycoprotein. (1590 aa)
	X777_09878	SEC13-like protein; Belongs to the WD repeat SEC13 family. (311 aa)
	X777_10484	Nuclear pore complex protein. (1862 aa)
	DMN91_012022	mRNA export factor. (355 aa)
	DMN91_010334	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (813 aa)
	X777_13866	Nucleoporin NDC1. (440 aa)
	X777_12986	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (626 aa)
	DMN91_012410	Nuclear pore complex protein. (1135 aa)
	DMN91_012241	Nuclear pore complex protein. (1319 aa)
	DMN91_011112	Nuclear cap-binding protein subunit. (794 aa)
	X777_13127	Uncharacterized protein. (1397 aa)
	X777_07916	Nucleoporin Nup37. (322 aa)
	DMN91_004003	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (409 aa)
	DMN91_003646	Nuclear pore complex protein Nup50. (530 aa)
	X777_03776	Nuclear pore complex protein. (1569 aa)
	X777_04929	Nucleoprotein TPR. (2267 aa)
	X777_04094	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (318 aa)
	DMN91_011318	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (165 aa)
	X777_04247	Nuclear RNA export factor. (708 aa)
	X777_02711	Putative nucleoporin Nup54. (691 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_002662	DMN91_002981	A0A026WLL2	A0A026WPW3	RNA and export factor-binding protein.	Putative nucleoporin Nup58.	0.407
DMN91_002662	DMN91_003646	A0A026WLL2	A0A026X3N7	RNA and export factor-binding protein.	Nuclear pore complex protein Nup50.	0.663
DMN91_002662	DMN91_004003	A0A026WLL2	A0A026X0Z3	RNA and export factor-binding protein.	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.	0.656
DMN91_002662	DMN91_008762	A0A026WLL2	A0A026WRV6	RNA and export factor-binding protein.	Nuclear pore protein.	0.700
DMN91_002662	DMN91_010334	A0A026WLL2	A0A026VZ78	RNA and export factor-binding protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.673
DMN91_002662	DMN91_011112	A0A026WLL2	A0A026WWH0	RNA and export factor-binding protein.	Nuclear cap-binding protein subunit.	0.976
DMN91_002662	DMN91_011318	A0A026WLL2	A0A026WIT2	RNA and export factor-binding protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.967
DMN91_002662	DMN91_011854	A0A026WLL2	A0A026WQF6	RNA and export factor-binding protein.	Nuclear pore complex protein Nup98-Nup96.	0.704
DMN91_002662	DMN91_012022	A0A026WLL2	A0A026W1H0	RNA and export factor-binding protein.	mRNA export factor.	0.902
DMN91_002662	DMN91_012241	A0A026WLL2	A0A026VTC4	RNA and export factor-binding protein.	Nuclear pore complex protein.	0.712
DMN91_002662	DMN91_012410	A0A026WLL2	A0A026VVE9	RNA and export factor-binding protein.	Nuclear pore complex protein.	0.662
DMN91_002662	X777_01208	A0A026WLL2	A0A026WRE3	RNA and export factor-binding protein.	E3 SUMO-protein ligase RanBP2.	0.684
DMN91_002662	X777_02711	A0A026WLL2	A0A026WLE2	RNA and export factor-binding protein.	Putative nucleoporin Nup54.	0.655
DMN91_002662	X777_03776	A0A026WLL2	A0A026WHI1	RNA and export factor-binding protein.	Nuclear pore complex protein.	0.691
DMN91_002662	X777_04094	A0A026WLL2	A0A026WIM9	RNA and export factor-binding protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.643
DMN91_002662	X777_04247	A0A026WLL2	A0A026WJ15	RNA and export factor-binding protein.	Nuclear RNA export factor.	0.985
DMN91_002662	X777_04929	A0A026WLL2	A0A026WHU1	RNA and export factor-binding protein.	Nucleoprotein TPR.	0.818
DMN91_002662	X777_06008	A0A026WLL2	A0A026WE14	RNA and export factor-binding protein.	Nuclear pore glycoprotein p62.	0.645
DMN91_002662	X777_07916	A0A026WLL2	A0A026X0I4	RNA and export factor-binding protein.	Nucleoporin Nup37.	0.669
DMN91_002662	X777_08503	A0A026WLL2	A0A026W9Z0	RNA and export factor-binding protein.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.693