41 items (Ooceraea biroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DMN91_005994	CYCLIN domain-containing protein; Belongs to the cyclin family. (304 aa)
	X777_01504	Ski oncogene. (785 aa)
	DMN91_001357	Polyubiquitin-A. (458 aa)
	X777_15168	Homeobox protein AKR. (336 aa)
	DMN91_011574	Cyclin-K; Belongs to the cyclin family. (414 aa)
	X777_11768	Nuclear receptor corepressor. (1394 aa)
	X777_11771	Nuclear receptor corepressor. (899 aa)
	X777_10649	Homeobox protein araucan. (637 aa)
	X777_10598	Homeobox protein homothorax. (199 aa)
	X777_10595	Homeobox protein homothorax. (395 aa)
	X777_10647	Homeobox protein caupolican. (583 aa)
	X777_09188	Homeobox protein homothorax. (113 aa)
	X777_07093	Cyclin-C; Belongs to the cyclin family. (266 aa)
	X777_06520	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2313 aa)
	X777_04468	Mothers against decapentaplegic homolog. (400 aa)
	DMN91_001351	Gamma-glutamylcyclotransferase. (176 aa)
	X777_04485	E3 ubiquitin-protein ligase. (892 aa)
	X777_04570	E3 ubiquitin-protein ligase. (848 aa)
	DMN91_006618	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (497 aa)
	X777_03168	Poly [ADP-ribose] polymerase. (986 aa)
	DMN91_006616	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (493 aa)
	DMN91_002515	Menin. (611 aa)
	X777_02600	KxDL domain-containing protein. (201 aa)
	X777_01238	Polyubiquitin-A. (839 aa)
	X777_14899	Sodium/potassium-transporting ATPase subunit beta-2. (326 aa)
	DMN91_009300	Sodium/potassium-transporting ATPase subunit beta-2. (315 aa)
	X777_16857	Cyclin-dependent kinase. (455 aa)
	X777_14898	Sodium/potassium-transporting ATPase subunit beta-2. (333 aa)
	DMN91_009557	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	X777_08282	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (127 aa)
	DMN91_010034	Transcription factor Dp-1. (485 aa)
	DMN91_004814	Cyclin-dependent kinase; Belongs to the protein kinase superfamily. (381 aa)
	X777_12045	Protein phosphatase 1B. (377 aa)
	X777_09337	Cyclin-T; Belongs to the cyclin family. (1472 aa)
	X777_08356	Protein yorkie. (204 aa)
	DMN91_004634	Retinoblastoma-like protein. (1039 aa)
	DMN91_006130	Puff-specific protein Bx42. (542 aa)
	X777_00600	Furin; Belongs to the peptidase S8 family. (980 aa)
	X777_10070	Transcription factor E2F5. (326 aa)
	X777_10145	Mothers against decapentaplegic homolog. (647 aa)
	DMN91_002614	Ubiquitin-60S ribosomal protein L40. (128 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_001351	DMN91_001357	A0A026WGK4	A0A026VWK9	Gamma-glutamylcyclotransferase.	Polyubiquitin-A.	0.758
DMN91_001351	DMN91_002614	A0A026WGK4	A0A026X3M9	Gamma-glutamylcyclotransferase.	Ubiquitin-60S ribosomal protein L40.	0.991
DMN91_001351	DMN91_004634	A0A026WGK4	A0A026X1C4	Gamma-glutamylcyclotransferase.	Retinoblastoma-like protein.	0.519
DMN91_001351	X777_01238	A0A026WGK4	A0A026WRG4	Gamma-glutamylcyclotransferase.	Polyubiquitin-A.	0.758
DMN91_001351	X777_02600	A0A026WGK4	A0A026WQG3	Gamma-glutamylcyclotransferase.	KxDL domain-containing protein.	0.601
DMN91_001351	X777_03168	A0A026WGK4	A0A026WPG3	Gamma-glutamylcyclotransferase.	Poly [ADP-ribose] polymerase.	0.409
DMN91_001351	X777_04485	A0A026WGK4	A0A026WH76	Gamma-glutamylcyclotransferase.	E3 ubiquitin-protein ligase.	0.486
DMN91_001351	X777_04570	A0A026WGK4	A0A026WHG8	Gamma-glutamylcyclotransferase.	E3 ubiquitin-protein ligase.	0.486
DMN91_001351	X777_06520	A0A026WGK4	A0A026WEI3	Gamma-glutamylcyclotransferase.	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family.	0.494
DMN91_001351	X777_08282	A0A026WGK4	A0A026WYC9	Gamma-glutamylcyclotransferase.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.716
DMN91_001351	X777_08356	A0A026WGK4	A0A026X1A6	Gamma-glutamylcyclotransferase.	Protein yorkie.	0.486
DMN91_001357	DMN91_001351	A0A026VWK9	A0A026WGK4	Polyubiquitin-A.	Gamma-glutamylcyclotransferase.	0.758
DMN91_001357	DMN91_002614	A0A026VWK9	A0A026X3M9	Polyubiquitin-A.	Ubiquitin-60S ribosomal protein L40.	0.952
DMN91_001357	DMN91_004634	A0A026VWK9	A0A026X1C4	Polyubiquitin-A.	Retinoblastoma-like protein.	0.531
DMN91_001357	DMN91_009557	A0A026VWK9	A0A026WXK5	Polyubiquitin-A.	Ubiquitin-40S ribosomal protein S27a.	0.925
DMN91_001357	X777_01504	A0A026VWK9	A0A026VTG4	Polyubiquitin-A.	Ski oncogene.	0.475
DMN91_001357	X777_02600	A0A026VWK9	A0A026WQG3	Polyubiquitin-A.	KxDL domain-containing protein.	0.436
DMN91_001357	X777_03168	A0A026VWK9	A0A026WPG3	Polyubiquitin-A.	Poly [ADP-ribose] polymerase.	0.479
DMN91_001357	X777_04485	A0A026VWK9	A0A026WH76	Polyubiquitin-A.	E3 ubiquitin-protein ligase.	0.795
DMN91_001357	X777_04570	A0A026VWK9	A0A026WHG8	Polyubiquitin-A.	E3 ubiquitin-protein ligase.	0.756