14 items (Ooceraea biroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	X777_13549	Adapter molecule Crk. (270 aa)
	X777_06792	Guanine nucleotide-releasing factor. (988 aa)
	DMN91_008089	Protein E(Sev)2B. (211 aa)
	X777_01238	Polyubiquitin-A. (839 aa)
	X777_08494	Tyrosine-protein kinase. (504 aa)
	DMN91_004547	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family. (1079 aa)
	X777_08899	E3 ubiquitin-protein ligase CBL-B. (762 aa)
	X777_11412	Protein daughter of sevenless. (598 aa)
	DMN91_005536	Protein vav. (646 aa)
	X777_11694	Protein vav. (820 aa)
	X777_11654	Phosphatidylinositol 3-kinase regulatory subunit alpha. (867 aa)
	DMN91_001357	Polyubiquitin-A. (458 aa)
	DMN91_002614	Ubiquitin-60S ribosomal protein L40. (128 aa)
	DMN91_009557	Ubiquitin-40S ribosomal protein S27a. (156 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_001357	DMN91_002614	A0A026VWK9	A0A026X3M9	Polyubiquitin-A.	Ubiquitin-60S ribosomal protein L40.	0.952
DMN91_001357	DMN91_008089	A0A026VWK9	A0A026WTT4	Polyubiquitin-A.	Protein E(Sev)2B.	0.544
DMN91_001357	DMN91_009557	A0A026VWK9	A0A026WXK5	Polyubiquitin-A.	Ubiquitin-40S ribosomal protein S27a.	0.925
DMN91_001357	X777_08899	A0A026VWK9	A0A026WB25	Polyubiquitin-A.	E3 ubiquitin-protein ligase CBL-B.	0.752
DMN91_002614	DMN91_001357	A0A026X3M9	A0A026VWK9	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.952
DMN91_002614	DMN91_008089	A0A026X3M9	A0A026WTT4	Ubiquitin-60S ribosomal protein L40.	Protein E(Sev)2B.	0.651
DMN91_002614	DMN91_009557	A0A026X3M9	A0A026WXK5	Ubiquitin-60S ribosomal protein L40.	Ubiquitin-40S ribosomal protein S27a.	0.999
DMN91_002614	X777_01238	A0A026X3M9	A0A026WRG4	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.995
DMN91_002614	X777_08494	A0A026X3M9	A0A026WCK3	Ubiquitin-60S ribosomal protein L40.	Tyrosine-protein kinase.	0.452
DMN91_002614	X777_08899	A0A026X3M9	A0A026WB25	Ubiquitin-60S ribosomal protein L40.	E3 ubiquitin-protein ligase CBL-B.	0.846
DMN91_004547	DMN91_005536	A0A026WCF3	A0A026W1X0	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	Protein vav.	0.400
DMN91_004547	DMN91_008089	A0A026WCF3	A0A026WTT4	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	Protein E(Sev)2B.	0.761
DMN91_004547	X777_06792	A0A026WCF3	A0A026WC94	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	Guanine nucleotide-releasing factor.	0.420
DMN91_004547	X777_08899	A0A026WCF3	A0A026WB25	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	E3 ubiquitin-protein ligase CBL-B.	0.690
DMN91_004547	X777_11412	A0A026WCF3	A0A026W4F4	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	Protein daughter of sevenless.	0.664
DMN91_004547	X777_11654	A0A026WCF3	A0A026W141	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3-kinase regulatory subunit alpha.	0.999
DMN91_004547	X777_11694	A0A026WCF3	A0A026W1T4	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	Protein vav.	0.400
DMN91_005536	DMN91_004547	A0A026W1X0	A0A026WCF3	Protein vav.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; Belongs to the PI3/PI4-kinase family.	0.400
DMN91_005536	DMN91_008089	A0A026W1X0	A0A026WTT4	Protein vav.	Protein E(Sev)2B.	0.861
DMN91_005536	X777_08494	A0A026W1X0	A0A026WCK3	Protein vav.	Tyrosine-protein kinase.	0.462