STRINGSTRING
X777_13128 X777_13128 DMN91_003751 DMN91_003751 X777_07784 X777_07784 X777_00232 X777_00232 X777_00138 X777_00138 X777_16479 X777_16479 X777_15640 X777_15640 X777_11764 X777_11764 DMN91_000771 DMN91_000771 X777_10866 X777_10866 X777_11703 X777_11703 X777_09882 X777_09882 X777_09736 X777_09736 DMN91_007031 DMN91_007031 X777_07999 X777_07999 DMN91_001935 DMN91_001935 DMN91_004655 DMN91_004655 DMN91_004666 DMN91_004666 X777_05837 X777_05837 X777_05972 X777_05972 X777_05973 X777_05973 DMN91_006771 DMN91_006771 X777_06622 X777_06622 X777_04415 X777_04415 DMN91_009373 DMN91_009373 DMN91_011318 DMN91_011318 DMN91_003280 DMN91_003280 DMN91_010321 DMN91_010321 DMN91_010220 DMN91_010220 DMN91_009679 DMN91_009679 X777_02763 X777_02763 X777_02761 X777_02761 X777_02459 X777_02459 DMN91_009851 DMN91_009851 X777_01473 X777_01473 X777_01232 X777_01232 DMN91_006057 DMN91_006057 DMN91_009503 DMN91_009503 X777_14723 X777_14723 DMN91_011014 DMN91_011014 DMN91_008090 DMN91_008090 X777_14853 X777_14853 DMN91_009000 DMN91_009000 DMN91_011160 DMN91_011160 X777_13489 X777_13489 DMN91_011112 DMN91_011112 DMN91_010499 DMN91_010499 DMN91_010284 DMN91_010284 X777_13477 X777_13477 DMN91_007483 DMN91_007483 DMN91_002849 DMN91_002849 DMN91_004582 DMN91_004582 DMN91_008030 DMN91_008030
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
X777_13128Y-box factor-like protein. (329 aa)
DMN91_003751Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
X777_07784Serine/arginine-rich splicing factor. (177 aa)
X777_00232DNA-directed RNA polymerase II 16 kDa polypeptide. (140 aa)
X777_00138Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
X777_16479Splicing factor 3B subunit. (794 aa)
X777_15640DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1129 aa)
X777_11764DNA-directed RNA polymerase II subunit RPB9. (67 aa)
DMN91_000771DNA-directed RNA polymerases I, II, and III subunit RPABC2. (130 aa)
X777_10866DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1139 aa)
X777_11703DNA-directed RNA polymerase II subunit RPB7. (293 aa)
X777_09882DNA-directed RNA polymerases I, II, and III subunit RPABC3. (167 aa)
X777_09736Splicing factor 3B subunit. (1218 aa)
DMN91_007031Uncharacterized protein. (2133 aa)
X777_07999Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (105 aa)
DMN91_001935Small nuclear ribonucleoprotein G. (76 aa)
DMN91_004655U5 small nuclear ribonucleoprotein 40 kDa protein. (349 aa)
DMN91_004666DNA-directed RNA polymerase II subunit RPB11. (117 aa)
X777_05837RNA-binding protein. (147 aa)
X777_05972U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (122 aa)
X777_05973U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (270 aa)
DMN91_006771Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (785 aa)
X777_06622DNA-directed RNA polymerase II subunit RPB9. (52 aa)
X777_04415Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (517 aa)
DMN91_009373Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
DMN91_011318Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (165 aa)
DMN91_003280Uncharacterized protein. (572 aa)
DMN91_010321U5 small nuclear ribonucleoprotein component. (979 aa)
DMN91_010220General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (272 aa)
DMN91_009679Splicing factor 3B subunit. (407 aa)
X777_02763RNA-binding protein. (260 aa)
X777_02761RNA-binding protein. (337 aa)
X777_02459DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
DMN91_009851ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family. (769 aa)
X777_01473Zinc finger matrin-type protein. (167 aa)
X777_01232Pre-mRNA branch site p14-like protein. (125 aa)
DMN91_006057Small nuclear ribonucleoprotein-associated protein. (216 aa)
DMN91_009503Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
X777_14723Serine/arginine-rich splicing factor 1A. (249 aa)
DMN91_011014U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein. (533 aa)
DMN91_008090DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
X777_14853Pre-mRNA-processing factor. (931 aa)
DMN91_009000U11/U12 small nuclear ribonucleoprotein 25 kDa protein. (178 aa)
DMN91_011160Small nuclear ribonucleoprotein Sm D3. (142 aa)
X777_13489Small nuclear ribonucleoprotein Sm D2. (119 aa)
DMN91_011112Nuclear cap-binding protein subunit. (794 aa)
DMN91_010499Pre-mRNA-processing-splicing factor. (2372 aa)
DMN91_010284DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
X777_13477DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1901 aa)
DMN91_007483Splicing factor 3B subunit. (704 aa)
DMN91_002849Zinc finger CCHC-type and RNA-binding motif-containing protein. (237 aa)
DMN91_004582DNA-directed RNA polymerase II subunit RPB3. (276 aa)
DMN91_008030Programmed cell death protein. (387 aa)
Your Current Organism:
Ooceraea biroi
NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant
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