32 items (Ooceraea biroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DMN91_010284	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	X777_15629	Uncharacterized protein. (132 aa)
	DMN91_004844	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (321 aa)
	DMN91_001910	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	X777_11525	DNA-directed RNA polymerase I subunit RPA43. (379 aa)
	X777_11156	TFIIH basal transcription factor complex helicase XPD subunit. (756 aa)
	DMN91_000771	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (130 aa)
	X777_09882	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (167 aa)
	X777_10816	Cyclin-dependent kinase; Belongs to the protein kinase superfamily. (338 aa)
	DMN91_000752	TATA-box-binding protein. (241 aa)
	X777_10477	DNA-directed RNA polymerase I subunit RPA43. (168 aa)
	DMN91_004401	General transcription factor IIH subunit. (559 aa)
	X777_09005	Cyclin-H; Belongs to the cyclin family. (494 aa)
	X777_09843	DNA excision repair protein ERCC-6. (1073 aa)
	DMN91_004902	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	X777_06618	DNA-directed RNA polymerases I and III subunit RPAC1. (348 aa)
	X777_05821	Acidic repeat-containing protein. (934 aa)
	DMN91_009942	DNA-directed RNA polymerase I subunit RPA49. (384 aa)
	X777_05345	DNA excision repair protein haywire. (794 aa)
	X777_04559	Uncharacterized protein. (100 aa)
	X777_03657	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	DMN91_009993	TATA box-binding protein-like protein. (295 aa)
	X777_02654	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1707 aa)
	X777_10136	General transcription factor IIH subunit. (294 aa)
	X777_02107	RNA polymerase I-specific transcription initiation factor RRN3. (545 aa)
	X777_02459	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
	X777_01765	General transcription factor IIH subunit. (58 aa)
	X777_15967	L-asparaginase. (1283 aa)
	DMN91_008090	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	DMN91_010520	TATA-box-binding protein. (306 aa)
	DMN91_006226	General transcription factor IIH subunit. (401 aa)
	DMN91_008082	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1103 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_000752	DMN91_000771	A0A026W5U7	A0A026W3T5	TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.913
DMN91_000752	DMN91_001910	A0A026W5U7	A0A026W0T2	TATA-box-binding protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.766
DMN91_000752	DMN91_004401	A0A026W5U7	A0A026W810	TATA-box-binding protein.	General transcription factor IIH subunit.	0.905
DMN91_000752	DMN91_004844	A0A026W5U7	A0A026VVR6	TATA-box-binding protein.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.897
DMN91_000752	DMN91_004902	A0A026W5U7	A0A026WC09	TATA-box-binding protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.915
DMN91_000752	DMN91_006226	A0A026W5U7	A0A026X2R0	TATA-box-binding protein.	General transcription factor IIH subunit.	0.881
DMN91_000752	DMN91_008082	A0A026W5U7	A0A026WUS5	TATA-box-binding protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.676
DMN91_000752	DMN91_008090	A0A026W5U7	A0A026WTN4	TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.939
DMN91_000752	DMN91_009942	A0A026W5U7	A0A026WDZ9	TATA-box-binding protein.	DNA-directed RNA polymerase I subunit RPA49.	0.524
DMN91_000752	DMN91_009993	A0A026W5U7	A0A026WJN1	TATA-box-binding protein.	TATA box-binding protein-like protein.	0.916
DMN91_000752	DMN91_010284	A0A026W5U7	A0A026WWS9	TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.916
DMN91_000752	DMN91_010520	A0A026W5U7	A0A026WTY6	TATA-box-binding protein.	TATA-box-binding protein.	0.905
DMN91_000752	X777_01765	A0A026W5U7	A0A026WPZ3	TATA-box-binding protein.	General transcription factor IIH subunit.	0.672
DMN91_000752	X777_02107	A0A026W5U7	A0A026WNC2	TATA-box-binding protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.716
DMN91_000752	X777_02459	A0A026W5U7	A0A026WP61	TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.905
DMN91_000752	X777_02654	A0A026W5U7	A0A026WLH6	TATA-box-binding protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.678
DMN91_000752	X777_03657	A0A026W5U7	A0A026WIV4	TATA-box-binding protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.657
DMN91_000752	X777_05345	A0A026W5U7	A0A026WFU6	TATA-box-binding protein.	DNA excision repair protein haywire.	0.914
DMN91_000752	X777_05821	A0A026W5U7	A0A026WDD5	TATA-box-binding protein.	Acidic repeat-containing protein.	0.589
DMN91_000752	X777_06618	A0A026W5U7	A0A026WCW5	TATA-box-binding protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.767