(121 nodes) Nonsense-Mediated Decay (NMD) network (Ooceraea biroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	X777_03896	Protein SMG5. (226 aa)
	X777_00685	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (148 aa)
	X777_00216	Protein SMG5. (630 aa)
	X777_15350	60S ribosomal protein L18a. (171 aa)
	X777_02379	Protein SMG7. (1163 aa)
	DMN91_010252	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (633 aa)
	X777_14294	Regulator of nonsense transcripts 3A. (601 aa)
	DMN91_000400	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (193 aa)
	X777_15427	40S ribosomal protein S19a. (185 aa)
	X777_12751	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (168 aa)
	X777_12766	60S ribosomal protein L5. (992 aa)
	DMN91_009542	RNA-binding protein with serine-rich domain. (325 aa)
	DMN91_005458	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	X777_12148	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	X777_12153	Putative 60S ribosomal protein L37-A. (41 aa)
	X777_11826	60S ribosomal protein L35a. (138 aa)
	X777_11755	40S ribosomal protein S17. (130 aa)
	DMN91_011601	KH type-2 domain-containing protein. (242 aa)
	DMN91_009365	60S ribosomal protein L10a. (217 aa)
	DMN91_011492	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (115 aa)
	X777_12116	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (415 aa)
	DMN91_006275	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (137 aa)
	DMN91_003816	40S ribosomal protein S27. (85 aa)
	X777_10797	60S ribosomal protein L34. (119 aa)
	X777_11207	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (278 aa)
	DMN91_001766	Regulator of nonsense transcripts. (1119 aa)
	DMN91_012600	60S ribosomal protein L8. (257 aa)
	DMN91_001764	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (204 aa)
	X777_09808	40S ribosomal protein S29. (56 aa)
	DMN91_000622	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	X777_10399	60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family. (105 aa)
	DMN91_010427	Protein SMG8. (908 aa)
	X777_09893	40S ribosomal protein S29. (107 aa)
	DMN91_003434	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (185 aa)
	X777_09680	Protein CASC3. (799 aa)
	DMN91_007066	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (125 aa)
	X777_09253	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (402 aa)
	DMN91_003039	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	X777_08965	60S ribosomal protein L24. (112 aa)
	DMN91_010410	60S ribosomal protein L14. (153 aa)
	DMN91_011622	40S ribosomal protein S10. (159 aa)
	X777_07169	60S ribosomal protein L7. (252 aa)
	DMN91_007065	60S ribosomal protein L21. (159 aa)
	X777_08506	60S ribosomal protein L35. (122 aa)
	DMN91_004849	60S ribosomal protein L10. (219 aa)
	X777_07148	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (240 aa)
	DMN91_003322	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	DMN91_003016	40S ribosomal protein S28. (65 aa)
	X777_06876	Telomerase-binding protein EST1A. (50 aa)
	X777_06566	40S ribosomal protein S15a. (68 aa)
	DMN91_000101	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (199 aa)
	X777_06874	Telomerase-binding protein EST1A. (1180 aa)
	X777_06878	Telomerase-binding protein EST1A. (483 aa)
	DMN91_009349	60S ribosomal protein L9. (190 aa)
	DMN91_006762	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	DMN91_008961	Uncharacterized protein. (170 aa)
	DMN91_007147	Ribosomal protein L37; Binds to the 23S rRNA. (90 aa)
	X777_05488	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (534 aa)
	DMN91_011318	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (165 aa)
	DMN91_011250	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A. (618 aa)
	X777_03603	Uncharacterized protein. (992 aa)
	DMN91_011228	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	DMN91_001016	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (219 aa)
	X777_03530	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform. (590 aa)
	DMN91_010090	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	X777_04562	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (148 aa)
	X777_02314	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	X777_03296	60S ribosomal protein L6. (282 aa)
	DMN91_001297	Protein mago nashi. (160 aa)
	DMN91_000280	40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	X777_03127	mRNA-decapping enzyme 1A. (443 aa)
	X777_02513	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	X777_02968	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
	X777_00953	Regulator of nonsense transcripts. (1162 aa)
	X777_02600	KxDL domain-containing protein. (201 aa)
	X777_01210	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (114 aa)
	DMN91_011703	Protein SMG9. (379 aa)
	DMN91_002431	ADP-ribosylation factor-like protein 6-interacting protein. (194 aa)
	X777_14884	Uncharacterized protein. (959 aa)
	X777_14881	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (141 aa)
	DMN91_008739	60S ribosomal protein L31. (123 aa)
	DMN91_010900	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (221 aa)
	DMN91_008820	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	DMN91_008086	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (312 aa)
	X777_16004	60S ribosomal protein L4. (420 aa)
	X777_00315	60S ribosomal protein L32. (134 aa)
	X777_00408	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (118 aa)
	X777_15752	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	X777_16773	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (199 aa)
	X777_16666	60S ribosomal protein L22. (137 aa)
	DMN91_008383	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
	X777_16057	60S ribosomal protein L37a. (68 aa)
	DMN91_001434	60S ribosomal protein L26. (148 aa)
	X777_15329	40S ribosomal protein S20. (119 aa)
	X777_15969	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (443 aa)
	DMN91_011112	Nuclear cap-binding protein subunit. (794 aa)
	DMN91_010812	Uncharacterized protein. (213 aa)
	X777_13536	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (76 aa)
	X777_13316	60S ribosomal protein L28. (138 aa)
	DMN91_009964	60S ribosomal protein L30. (114 aa)
	DMN91_007491	Eukaryotic initiation factor 4A-III. (402 aa)
	DMN91_001911	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (267 aa)
	X777_13087	40S ribosomal protein S17. (179 aa)
	DMN91_008250	Eukaryotic peptide chain release factor subunit. (437 aa)
	X777_13075	Uncharacterized protein. (1024 aa)
	DMN91_004601	60S ribosomal protein L10. (219 aa)
	X777_08395	60S ribosomal protein L18. (188 aa)
	DMN91_005105	60S ribosomal protein L18. (188 aa)
	X777_13076	Uncharacterized protein. (186 aa)
	DMN91_004580	40S ribosomal protein S28. (65 aa)
	DMN91_003595	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (166 aa)
	DMN91_010680	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	DMN91_004223	60S ribosomal protein L7a. (268 aa)
	DMN91_009921	PIH1_CS domain-containing protein. (190 aa)
	X777_07507	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	X777_10106	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family. (2249 aa)
	X777_07308	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (233 aa)
	DMN91_003772	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (148 aa)
	DMN91_002614	Ubiquitin-60S ribosomal protein L40. (128 aa)
	DMN91_003431	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (134 aa)
	X777_10104	Non-specific serine/threonine protein kinase; Belongs to the PI3/PI4-kinase family. (1203 aa)

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_000101	DMN91_000280	A0A026WD95	A0A026WLG9	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.972
DMN91_000101	DMN91_000400	A0A026WD95	A0A026VXN0	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
DMN91_000101	DMN91_000622	A0A026WD95	A0A026W5Z7	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.986
DMN91_000101	DMN91_001016	A0A026WD95	A0A026WJA5	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
DMN91_000101	DMN91_001434	A0A026WD95	A0A026WUZ9	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L26.	0.999
DMN91_000101	DMN91_001764	A0A026WD95	A0A026W5F0	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
DMN91_000101	DMN91_001766	A0A026WD95	A0A026W4A1	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Regulator of nonsense transcripts.	0.414
DMN91_000101	DMN91_001911	A0A026WD95	A0A026WXG1	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
DMN91_000101	DMN91_002431	A0A026WD95	A0A026WRI7	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	ADP-ribosylation factor-like protein 6-interacting protein.	0.972
DMN91_000101	DMN91_002614	A0A026WD95	A0A026X3M9	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Ubiquitin-60S ribosomal protein L40.	0.999
DMN91_000101	DMN91_003016	A0A026WD95	A0A026WBR3	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S28.	0.990
DMN91_000101	DMN91_003039	A0A026WD95	A0A026W7L1	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
DMN91_000101	DMN91_003322	A0A026WD95	A0A026WBG6	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	0.999
DMN91_000101	DMN91_003431	A0A026WD95	A0A026X4S6	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
DMN91_000101	DMN91_003434	A0A026WD95	A0A026W6Q9	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
DMN91_000101	DMN91_003772	A0A026WD95	A0A026X3M2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
DMN91_000101	DMN91_003816	A0A026WD95	A0A026W2W2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S27.	0.999
DMN91_000101	DMN91_004223	A0A026WD95	A0A026X2G5	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L7a.	0.999
DMN91_000101	DMN91_004580	A0A026WD95	A0A026X0T9	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	40S ribosomal protein S28.	0.990
DMN91_000101	DMN91_004601	A0A026WD95	A0A026WYS0	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L10.	0.984