(24 nodes) ABC transporter, permease network (Rhizobium sp. CIAT894)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RHEC894_CH00221	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (367 aa)
	RHEC894_CH00222	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (323 aa)
	rbsC-1	Ribose ABC transporter permease protein RbsC 1; Belongs to the binding-protein-dependent transport system permease family. (344 aa)
	RHEC894_CH00507	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (354 aa)
	RHEC894_CH00533	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
	RHEC894_CH01446	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (298 aa)
	RHEC894_CH02117	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (361 aa)
	RHEC894_CH02118	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (306 aa)
	RHEC894_CH02122	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (337 aa)
	RHEC894_CH02123	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (322 aa)
	rbsC-2	Ribose ABC transporter permease protein RbsC 2; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
	RHEC894_CH03241	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (403 aa)
	xylH	Xylose ABC transporter permease protein XylH; Belongs to the binding-protein-dependent transport system permease family. (437 aa)
	RHEC894_CH03386	Urea ABC transporter permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family. (387 aa)
	RHEC894_CH03387	Urea ABC transporter permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family. (550 aa)
	livM-1	High-affinity branched-chain amino acid ABC transporter permease protein LivM 1; Belongs to the binding-protein-dependent transport system permease family. (463 aa)
	livH-1	High-affinity branched-chain amino acid ABC transporter permease protein LivH 1; Belongs to the binding-protein-dependent transport system permease family. (300 aa)
	RHEC894_CH03489	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (332 aa)
	RHEC894_CH03510	High-affinity branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (321 aa)
	RHEC894_CH03511	High-affinity branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (285 aa)
	RHEC894_CH03790	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (334 aa)
	araH	L-arabinose transporter permease protein AraH; Belongs to the binding-protein-dependent transport system permease family. (316 aa)
	RHEC894_CH04120	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (292 aa)
	RHEC894_CH04258	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (341 aa)

Your Current Organism:

Rhizobium sp. CIAT894

NCBI taxonomy Id: 2020312
Other names: R. sp. CIAT894

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RHEC894_CH00221	RHEC894_CH00222	RHEC894_CH00221	RHEC894_CH00222	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.988
RHEC894_CH00221	RHEC894_CH02117	RHEC894_CH00221	RHEC894_CH02117	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.775
RHEC894_CH00221	RHEC894_CH02118	RHEC894_CH00221	RHEC894_CH02118	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.983
RHEC894_CH00221	RHEC894_CH03241	RHEC894_CH00221	RHEC894_CH03241	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.467
RHEC894_CH00221	xylH	RHEC894_CH00221	RHEC894_CH03251	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Xylose ABC transporter permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.467
RHEC894_CH00222	RHEC894_CH00221	RHEC894_CH00222	RHEC894_CH00221	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.988
RHEC894_CH00222	RHEC894_CH02117	RHEC894_CH00222	RHEC894_CH02117	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.983
RHEC894_CH00222	RHEC894_CH02118	RHEC894_CH00222	RHEC894_CH02118	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.752
RHEC894_CH00507	xylH	RHEC894_CH00507	RHEC894_CH03251	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Xylose ABC transporter permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.413
RHEC894_CH00533	RHEC894_CH02122	RHEC894_CH00533	RHEC894_CH02122	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.442
RHEC894_CH00533	RHEC894_CH03790	RHEC894_CH00533	RHEC894_CH03790	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.764
RHEC894_CH00533	xylH	RHEC894_CH00533	RHEC894_CH03251	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Xylose ABC transporter permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.418
RHEC894_CH01446	RHEC894_CH03386	RHEC894_CH01446	RHEC894_CH03386	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Urea ABC transporter permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.	0.879
RHEC894_CH01446	RHEC894_CH03387	RHEC894_CH01446	RHEC894_CH03387	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Urea ABC transporter permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.	0.769
RHEC894_CH01446	RHEC894_CH03510	RHEC894_CH01446	RHEC894_CH03510	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.967
RHEC894_CH01446	RHEC894_CH03511	RHEC894_CH01446	RHEC894_CH03511	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.819
RHEC894_CH01446	livH-1	RHEC894_CH01446	RHEC894_CH03397	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid ABC transporter permease protein LivH 1; Belongs to the binding-protein-dependent transport system permease family.	0.775
RHEC894_CH01446	livM-1	RHEC894_CH01446	RHEC894_CH03396	Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	High-affinity branched-chain amino acid ABC transporter permease protein LivM 1; Belongs to the binding-protein-dependent transport system permease family.	0.985
RHEC894_CH02117	RHEC894_CH00221	RHEC894_CH02117	RHEC894_CH00221	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.775
RHEC894_CH02117	RHEC894_CH00222	RHEC894_CH02117	RHEC894_CH00222	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.983