STRINGSTRING
Cthe_0045 Cthe_0045 Cthe_0327 Cthe_0327 Cthe_1778 Cthe_1778 Cthe_2454 Cthe_2454 Cthe_2782 Cthe_2782 olpB olpB Cthe_3227 Cthe_3227
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cthe_0045PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase domain protein. (269 aa)
Cthe_0327PFAM: S-layer domain-containing protein; KEGG: gym:GYMC10_4794 legume lectin beta domain protein. (857 aa)
Cthe_1778PFAM: copper amine oxidase-like domain-containing protein; KEGG: cpo:COPRO5265_1473 protease, putative. (319 aa)
Cthe_2454KEGG: cce:Ccel_0274 S-layer domain protein; PFAM: S-layer domain-containing protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein. (1042 aa)
Cthe_2782PFAM: N-acetylmuramoyl-L-alanine amidase family 2; S-layer domain-containing protein; KEGG: swo:Swol_1062 negative regulator of beta-lactamase expression-like protein. (252 aa)
olpBPFAM: cellulosome anchoring protein cohesin region; S-layer domain-containing protein; KEGG: lel:LELG_02536 hypothetical protein. (2313 aa)
Cthe_3227PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase domain protein. (267 aa)
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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