STRINGSTRING
Sde_1929 Sde_1929 Sde_1930 Sde_1930 Sde_1931 Sde_1931 Sde_1954 Sde_1954 Sde_1955 Sde_1955 Sde_1956 Sde_1956 Sde_1957 Sde_1957 Sde_1958 Sde_1958 Sde_1959 Sde_1959 Sde_1960 Sde_1960 Sde_1961 Sde_1961 Sde_3766 Sde_3766 Sde_3767 Sde_3767 Sde_3768 Sde_3768 Sde_3935 Sde_3935 Sde_3936 Sde_3936
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sde_1929Outer membrane efflux protein. (447 aa)
Sde_1930Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (629 aa)
Sde_1931Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1039 aa)
Sde_1954Transcriptional regulator, Crp/Fnr family. (293 aa)
Sde_1955Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1043 aa)
Sde_1956Putative RND efflux system protein, MFP subunit. (358 aa)
Sde_1957Hypothetical protein. (86 aa)
Sde_1958Outer membrane efflux protein. (422 aa)
Sde_1959Hypothetical protein. (121 aa)
Sde_1960Co/Zn/Cd efflux system component. (303 aa)
Sde_1961Cd(II)/Pb(II)-responsive transcriptional regulator. (134 aa)
Sde_3766Outer membrane efflux protein. (415 aa)
Sde_3767Biotin/lipoyl attachment. (368 aa)
Sde_3768Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1038 aa)
Sde_3935Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1042 aa)
Sde_3936Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (491 aa)
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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