STRINGSTRING
Sde_3096 Sde_3096 Sde_3936 Sde_3936 Sde_3933 Sde_3933 Sde_3767 Sde_3767 Sde_3489 Sde_3489 Sde_3236 Sde_3236 Sde_3235 Sde_3235 Sde_3234 Sde_3234 Sde_2782 Sde_2782 Sde_2448 Sde_2448 Sde_2283 Sde_2283 Sde_2268 Sde_2268 Sde_1956 Sde_1956 Sde_1930 Sde_1930 Sde_1756 Sde_1756 Sde_1292 Sde_1292 Sde_1119 Sde_1119 Sde_0328 Sde_0328 Sde_0309 Sde_0309
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sde_3096Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (398 aa)
Sde_3936Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (491 aa)
Sde_3933Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (395 aa)
Sde_3767Biotin/lipoyl attachment. (368 aa)
Sde_3489Secretion protein HlyD. (393 aa)
Sde_3236GAF domain protein. (578 aa)
Sde_3235Peptidase, M50 family. (711 aa)
Sde_3234Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (309 aa)
Sde_2782Secretion protein HlyD. (401 aa)
Sde_2448Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (359 aa)
Sde_2283Methyl-accepting chemotaxis sensory transducer; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (361 aa)
Sde_2268Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (423 aa)
Sde_1956Putative RND efflux system protein, MFP subunit. (358 aa)
Sde_1930Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (629 aa)
Sde_1756Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (363 aa)
Sde_1292Type I secretion membrane fusion protein, HlyD. (461 aa)
Sde_1119Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (369 aa)
Sde_0328Secretion protein HlyD. (434 aa)
Sde_0309Secretion protein HlyD. (416 aa)
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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