STRINGSTRING
rtcB rtcB Sde_0366 Sde_0366 ftsI ftsI Sde_0879 Sde_0879 Sde_1118 Sde_1118 Sde_1119 Sde_1119 hex3C hex3C Sde_2027 Sde_2027 Sde_2028 Sde_2028 Sde_2029 Sde_2029 Sde_2030 Sde_2030 Sde_2031 Sde_2031 Sde_2449 Sde_2449 Sde_2692 Sde_2692 Sde_3096 Sde_3096 mrdA mrdA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rtcBProtein of unknown function UPF0027; Belongs to the RtcB family. (410 aa)
Sde_0366Type I secretion outer membrane protein, TolC. (454 aa)
ftsIPeptidoglycan synthetase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. (568 aa)
Sde_0879Major facilitator superfamily MFS_1. (528 aa)
Sde_1118Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1043 aa)
Sde_1119Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (369 aa)
hex3Cbeta-N-acetylhexosaminidase. Glycosyl Hydrolase family 3; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. (344 aa)
Sde_2027Extracellular solute-binding protein, family 5. (555 aa)
Sde_2028Extracellular solute-binding protein, family 5. (544 aa)
Sde_2029Binding-protein-dependent transport systems inner membrane component. (311 aa)
Sde_2030Binding-protein-dependent transport systems inner membrane component. (293 aa)
Sde_2031ABC transporter related; Belongs to the ABC transporter superfamily. (539 aa)
Sde_2449Outer membrane efflux protein. (477 aa)
Sde_2692Putative bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase; Candidate murein polymerase. (846 aa)
Sde_3096Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (398 aa)
mrdAPAS/PAC sensor signal transduction histidine kinase / peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (619 aa)
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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