STRINGSTRING
Tery_0346 Tery_0346 Tery_1343 Tery_1343 Tery_1972 Tery_1972 Tery_1973 Tery_1973 Tery_2968 Tery_2968 Tery_3181 Tery_3181 Tery_3693 Tery_3693 Tery_3819 Tery_3819 Tery_3820 Tery_3820 Tery_3822 Tery_3822 Tery_4684 Tery_4684
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_0346KEGG: mag:amb1949 phenolpthiocerol synthesis polyketide synthase PpsA. (79 aa)
Tery_1343PFAM: Thioesterase; KEGG: ava:Ava_4730 thioesterase. (248 aa)
Tery_1972PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_4108 beta-ketoacyl synthase. (614 aa)
Tery_19738-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II phosphopantetheine-binding; KEGG: rba:RB386 saframycin Mx1 synthetase B. (544 aa)
Tery_2968TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase Thioesterase condensation domain phosphopantetheine-binding; KEGG: ava:Ava_3855 amino acid adenylation. (1331 aa)
Tery_3181PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_4108 beta-ketoacyl synthase. (596 aa)
Tery_3693PFAM: cytochrome P450; KEGG: ana:alr4766 cytochrome P450. (462 aa)
Tery_3819PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like Methyltransferase type 11 Methyltransferase type 12; KEGG: ana:alr2680 polyketide synthase. (2551 aa)
Tery_3820PFAM: AMP-dependent synthetase and ligase condensation domain phosphopantetheine-binding; KEGG: mlo:mll6983 similar to coenzyme a synthetase. (1453 aa)
Tery_3822PFAM: beta-ketoacyl synthase Thioesterase acyl transferase region phosphopantetheine-binding; KEGG: ava:Ava_3986 short-chain dehydrogenase/reductase SDR. (1354 aa)
Tery_4684TIGRFAM: Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: ava:Ava_2597 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. (245 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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